View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14513_low_2 (Length: 434)
Name: NF14513_low_2
Description: NF14513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14513_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Complemental strand, 37314402 - 37313988
Alignment:
| Q |
7 |
gtagcataggatatagtttgactttacaacaaaaatgagataagtttagtttggtttatcatattacatattcctccagaatatcatctggtgaaatttt |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37314402 |
gtagcataagatatagtttgactttacaacaaaagtgagataagtttagtttggtttatcatattacatattcctccagaatatcatctggtgaaatttt |
37314303 |
T |
|
| Q |
107 |
tgtttgttattcgacttgcctgtgnnnnnnnngtcctcatccttcctctaccttttatatgttcatgctaaattgggacattataggccctaaatccaat |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37314302 |
tgtttgttattcgacttgcctgttaaaaaaaagtcctcatccttcctctaccttttatatgttcatgctaaattgggacattataggccctaaatccaat |
37314203 |
T |
|
| Q |
207 |
atcattcactaaattgtctctcaaacaataa-tgttaattgatgtagcattatcggtcttagtttgcaaaatgtaagggaaagtttagtcactacttaaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37314202 |
atcattcactaaattgtctctcaaacaataaatgttaattgatgtagcattatcggtcttagtttgcaaaatgtaagggaaagtttagtcactacttaaa |
37314103 |
T |
|
| Q |
306 |
taaatagaaaagtcgagttgttgcaaactttcaaagattaatattaatcgttttcttatgctctattttatttttatcatgtttgttccaatctaagata |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37314102 |
taaatagaaaagtcgagttgttgcaaactttcaaagattaatattaatcgttttcttatgctctattttatttttatcatgtttgttccaatctaagata |
37314003 |
T |
|
| Q |
406 |
gagattagttcaatg |
420 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37314002 |
gagattagttcaatg |
37313988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University