View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14514_high_4 (Length: 304)
Name: NF14514_high_4
Description: NF14514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14514_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 3 - 288
Target Start/End: Complemental strand, 28195295 - 28194995
Alignment:
| Q |
3 |
atcaatttaaaatgacatatttcctccggtcctatataaaaagaaaattgggtcaataaaagttgatgtatatgaccggagtgagtgatattaaatgaat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28195295 |
atcaatttaaaatgacatatttcctccggtcctatataaaaagaaaattgggtcaataaaagttgatgtatatgaccggagtgagtgatattaaatgaat |
28195196 |
T |
|
| Q |
103 |
gataggtgcatatg---------------ttaccagggtgtttgccattatttatttgtatcttattattgatttgaattgcatgtggattttgtagtct |
187 |
Q |
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| T |
28195195 |
gataggtgcatacccaacaaaacactagattaccagggtgtttgccattatttatttgtatcttattattgatttgaattgcatgtggattttgtagtct |
28195096 |
T |
|
| Q |
188 |
gtgactgaggctctggagacgaaagttaagagcaaggtttctatcaaggtgacgttgcttgttttctttgatgcttttcttttgttaaatagtgaaaggt |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28195095 |
gtgactgaggctctggagacgaaagttaagagcaaggtttctatcaaggtgacgttgcttgttttctttgatgcttttcttttgttaaatagtgaaaggt |
28194996 |
T |
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| Q |
288 |
t |
288 |
Q |
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| |
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| T |
28194995 |
t |
28194995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 40138812 - 40138844
Alignment:
| Q |
41 |
aaaagaaaattgggtcaataaaagttgatgtat |
73 |
Q |
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| T |
40138812 |
aaaagaaaattgggttaataaaagttgatgtat |
40138844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 162709 - 162621
Alignment:
| Q |
159 |
atttgaattgcatgtggattttgtagtctgtgactgaggctctggagacgaaagttaagagcaaggtttctatcaaggtgacgttgctt |
247 |
Q |
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|||| |||||||||||||||||||||||| ||||||| |||||||| || ||||||| |||||||| ||||||||||| ||| ||||| |
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| T |
162709 |
attttaattgcatgtggattttgtagtctatgactgaagctctggaaacacaagttaaaagcaaggtctctatcaaggtaacgctgctt |
162621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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