View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14514_low_3 (Length: 441)
Name: NF14514_low_3
Description: NF14514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14514_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 47 - 435
Target Start/End: Complemental strand, 42209703 - 42209321
Alignment:
| Q |
47 |
gaaaggctatgaaaaatcctccatttgtgtctccttcaacgcaaggaatataagggaaatctctttcaaagataagttgttgatcgcagatgaaagtann |
146 |
Q |
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| T |
42209703 |
gaaaggctatgacaaatcctccatttgtgtctccttcgacgcaaggaatataagggaaatctctttcaaagataagttgttgatcgcaaatgaaagtatt |
42209604 |
T |
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| Q |
147 |
nnnnnnnnnnnccatgaacaaactaaatggattgatatatgtgatacgaaagacatggataacaattctcatcctattatatcaatggaagataaggaag |
246 |
Q |
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| T |
42209603 |
tttttt-----ccatgaacaaac-aaatggattgatatatgtgatacgaaagacatggataacaattctcatcctattatatcaatggaagataaggaag |
42209510 |
T |
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| Q |
247 |
cagtggtgttcgaagaggaatacggggagtggtgcgctggtggtcatggccctaagtgcgacgatcaatttcaagatgcttgagtcaagactatatagtc |
346 |
Q |
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| T |
42209509 |
cagtgatgttcgaagaggaatacggggagtggtgcgctggtggtcatggccctaagtgcgacgatcaatttcaagatgcttgagtcaagactatatagtc |
42209410 |
T |
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| Q |
347 |
tttggatccataatggatcaatcaaaattacaaatttgtcgcgtaactatttttatggtannnnnnncctaagaggattacaaacatat |
435 |
Q |
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| T |
42209409 |
tttggatccataatggatcaatcaaaattacaaatttgtcgcgtaactatttttatggtatttttttcctaagaggattacaaacatat |
42209321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 42209744 - 42209710
Alignment:
| Q |
18 |
agaggatgatctcttatagcgcagcataagaaagg |
52 |
Q |
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| T |
42209744 |
agaggttgatctcttatagcgcagcataagaaagg |
42209710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 19072774 - 19072732
Alignment:
| Q |
309 |
gatcaatttcaagatgcttgagtcaagactatatagtctttgg |
351 |
Q |
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| T |
19072774 |
gatcaatttcaagatgctttagtcaagactatatggtctttgg |
19072732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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