View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14514_low_4 (Length: 365)
Name: NF14514_low_4
Description: NF14514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14514_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 28196052 - 28195705
Alignment:
| Q |
1 |
gagatgaaaaaacgaagtaaggtatgtgtaaatgagttgttaatgttgtgtgacatcaatgagaggtttttgtattttgaattagtgggatgtgtatatc |
100 |
Q |
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| T |
28196052 |
gagatgaaaaaacgatgtaaggtatgtgtaaatgagttgttaatgttgtgtgacatctatgagaggtttttgtattttgaattagtgggatgtgtatatc |
28195953 |
T |
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| Q |
101 |
aatgttaatggaaaaaattatctacggaattttttggggggtgctgaaagtaattaatcctgtaaattcaacttcaacgtttttgtgggctgggctttac |
200 |
Q |
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| T |
28195952 |
aatgttaatggaaaaaattatctacggaattttttgggggg-gctgaaagtaattaatcctgtaaattcaacttcaatgtttttgtgggctgggctttac |
28195854 |
T |
|
| Q |
201 |
aaacatttatgaggacacgatggtaattacaatctgttctccaagcttcctctatatataccctcaactccaaattctagggtatataaggtcccaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| |
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| T |
28195853 |
aaacatttatgaggacacgatggtaattacaatctgttctccaagcttcctctatatatagcctcaactccaaattctagggtatataatgccccaattt |
28195754 |
T |
|
| Q |
301 |
tcttcgctcgcaaaattctatcgaccacatcaaccttaactcgcagaac |
349 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28195753 |
tcttcgctcgcaaaattctatcaaccacatcaaccttaactcgcagaac |
28195705 |
T |
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