View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14514_low_5 (Length: 344)
Name: NF14514_low_5
Description: NF14514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14514_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 38126491 - 38126804
Alignment:
| Q |
1 |
tatgttgcttattttgcatgttttttactgtatacatgttcctcagatcaaatctataacatgtaggactagttcatttgttttactgcatattccttaa |
100 |
Q |
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| T |
38126491 |
tatgttgcttattttgcaagttttctactgtatacatggtccttagatcaaacctataacatgtaggattagttcacttattttaat------------- |
38126577 |
T |
|
| Q |
101 |
gtcttatttctccatatttttgagaaatatttattaaatatatgcatgccttattagttggaatgcatttgacactgattgtttaattatttggttatat |
200 |
Q |
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| T |
38126578 |
-tcttatttctccatatttttgagaaatatttattaaatatatgcatgccttattagttggaatgcatttgacactgattgtttaattatttggttatat |
38126676 |
T |
|
| Q |
201 |
ataggttctgcttttttctttgaatgatatatataggttctgcttgtgttgtagttttggttatataactggagtgtcatatttggtggagtgatttctt |
300 |
Q |
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| T |
38126677 |
ataggttctgcttttttctttgaatgatatatataggttctgcttgtgtcgtagttttggttatataactggagtgtcatatttggtggagtgatttctt |
38126776 |
T |
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| Q |
301 |
gtttatagtacaagcattggtctaatct |
328 |
Q |
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| T |
38126777 |
gtgtatagtacaagcattggtctaatct |
38126804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 39708559 - 39708616
Alignment:
| Q |
81 |
ttttactgcatattccttaagtcttatttctccata-tttttgagaaatatttattaa |
137 |
Q |
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| T |
39708559 |
ttttaatgcacattccttaagtcttatttctccatattttttcagaaatgtttattaa |
39708616 |
T |
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