View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14515_high_5 (Length: 325)
Name: NF14515_high_5
Description: NF14515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14515_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 43891582 - 43891332
Alignment:
| Q |
7 |
ggttgaactggttctcaatttgatagatttattttcatagaaatgcaaaatatcaatgaa---atttcaaattatcgtcgcctcaaagctaacaatgcca |
103 |
Q |
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| T |
43891582 |
ggttgaactggttctcaatttgatagatttattttcatagaaatgcaaaatatcaatgaagccatttcaaattatcgtcgcctcaaagctaacaatgcca |
43891483 |
T |
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| Q |
104 |
catagaaatatggtttgatcaagagtgcttcctcatacttctctctcaaataatatttttcattgacacaattaatcataagccacttgaacaagatgag |
203 |
Q |
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| T |
43891482 |
catagaaatatggtttgatcaagagtgcttcctcatacttctctctcaaataatatttttcattgacac----aatcataagccacttgaacaggataag |
43891387 |
T |
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| Q |
204 |
tttgactattggtaattacatgtggagtgcaaatttggagatcaaaattatgtta |
258 |
Q |
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| T |
43891386 |
tttgactattggtaattacatgtggagtgcaaacttggagatcaaaattatgtta |
43891332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 55533501 - 55533545
Alignment:
| Q |
104 |
catagaaatatggtttgatcaagagtgcttcctcatacttctctc |
148 |
Q |
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| T |
55533501 |
catagaaatcaggtttgatcaagagtgcttcctcatacttctctc |
55533545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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