View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14515_high_8 (Length: 233)
Name: NF14515_high_8
Description: NF14515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14515_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 47047777 - 47047551
Alignment:
| Q |
1 |
cctacaggtgcacatgatcctaacagtgtaaccttctttgatggcgatggcatgtaacttttatagctagtgaaagcaaatcttgaccatccattttcaa |
100 |
Q |
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| T |
47047777 |
cctacaggtgcacatgatcctaacagtgtaaccttctttgatggcgatggcatgtaacttttatagctagtgaaagcaaatcttgaccatccattttcaa |
47047678 |
T |
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| Q |
101 |
cagcatcagcagccatagatggattttcaatccagctgaacaagtttgttgttctttttccagaaacataactgcgaaacagagaattattattgttctt |
200 |
Q |
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| T |
47047677 |
cagcatcagcagccatagatggattttcaatccagctgaacaagtttgttgttctttttccagaaacataactgcgaaacagagaattattattgttctt |
47047578 |
T |
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| Q |
201 |
gttactaccttgttctaattgatgatg |
227 |
Q |
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| T |
47047577 |
gttactaccttgttctaattgatgatg |
47047551 |
T |
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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 16291603 - 16291702
Alignment:
| Q |
124 |
ttttcaatccagctgaacaagtttgttgttctttttccagaaacataactgcgaaacagagaattattattgttcttgttactaccttgttctaattgat |
223 |
Q |
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| T |
16291603 |
ttttcaacccagctgaacaaatttgttgttctttttccaaaaacattactgcagaacagaga---attattgttattgttactacctcgttctaattgat |
16291699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 5656251 - 5656330
Alignment:
| Q |
64 |
tagctagtgaaagcaaatcttgaccatccattttcaacagcatcagcagccatagatggattttcaatccagctgaacaa |
143 |
Q |
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| T |
5656251 |
tagctagtgaaagcaaatcttgaccatccattttctatagcatcagaagctagatatggatgatcattccagttgaacaa |
5656330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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