View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14515_low_11 (Length: 273)
Name: NF14515_low_11
Description: NF14515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14515_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 4631661 - 4631903
Alignment:
| Q |
14 |
atagggccattggtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggat |
113 |
Q |
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| T |
4631661 |
atagggccattggtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggat |
4631760 |
T |
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| Q |
114 |
tagctttggctttgaaagacgggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagat |
213 |
Q |
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| T |
4631761 |
tagctttggctttgaaagacgggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagat |
4631860 |
T |
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| Q |
214 |
agtatcgttgaagtggccacaattcactgctaaaatatcatac |
256 |
Q |
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| T |
4631861 |
agtatcgttgaagtggccacaattcactgctaaaatatcatac |
4631903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 34 - 255
Target Start/End: Original strand, 4667683 - 4667898
Alignment:
| Q |
34 |
agaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggattagctttggctttgaaagac |
133 |
Q |
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| T |
4667683 |
agaaaatgagaatgtgaaatcggaaaatgatatacgtgcagaggaaaatggaatatgattaacagaatcagagttaggattagctttggcttttacagat |
4667782 |
T |
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| Q |
134 |
gggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagatagtatcgttgaagtggccac |
233 |
Q |
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| T |
4667783 |
atga------tttgtggttcaatgacagagaagagtttggtatcatcattgtccccaacccaggttcgattttcaaagatagtatctatggaatgaccac |
4667876 |
T |
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| Q |
234 |
aattcactgctaaaatatcata |
255 |
Q |
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| T |
4667877 |
aatttacagctaaaacatcata |
4667898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 18925115 - 18924874
Alignment:
| Q |
14 |
atagggccattggtgatggaagaaaaggagaatgtgaaattcgaaaaagaaatacgtgcagaggcgaagggaattcgcttaacagcatcagagttaggat |
113 |
Q |
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||||||| ||| | || ||||| ||| ||||||||||| || ||||| ||||||||||| ||||| || |||||| | ||||||| |||||||||||| | |
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| T |
18925115 |
atagggctattagcgacggaaggaaatgagaatgtgaagttggaaaatgaaatacgtgctgaggcaaacggaatttggttaacagaatcagagttagggt |
18925016 |
T |
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| Q |
114 |
tagctttggctttgaaagacgggagttcggtttgtggttcaatgatagagaataatttggtgttatccctgtccccaacccatgttcgattttcaaagat |
213 |
Q |
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| | ||||| ||||| ||| | | ||| || |||||||||||||||||||||| |||||||| |||| |||| |||||||| |||||||||||||| | |
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| T |
18925015 |
tgggtttggatttgatagatgaaaattcagtctgtggttcaatgatagagaatagtttggtgtcatccatgtcaccaacccaggttcgattttcaaatgt |
18924916 |
T |
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| Q |
214 |
agtatcgttgaagtggccacaattcactgctaaaatatcata |
255 |
Q |
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||||| || ||||||||||||||| |||||| ||||||| |
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| T |
18924915 |
tgtatctatggagtggccacaattcagggctaaattatcata |
18924874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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