View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14515_low_13 (Length: 236)
Name: NF14515_low_13
Description: NF14515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14515_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 42031530 - 42031329
Alignment:
| Q |
20 |
atctattcatcaacaattccttatcatgaatcttctgaattttcgacctcttctcttagtcatgttttccatatctgttttacagagaaacagctaaaac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
42031530 |
atctattcatcaacaattccttatcatgaatcttctgaattttcgacctcttctcttagtcatgttttcgatatctgttttatagagaaacagctaaaac |
42031431 |
T |
|
| Q |
120 |
cctaaatcccaaaaacacataaattagtcatga-ttatta-ttttgatttgggatttcagtttccaatttcggctttatcatcccattgtatctctcatc |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42031430 |
cctaaatcccaaaaacacataaattagtcatgatttattatttttgatttgggatttcagtttccaatttcggctttatcatcccattgtatctctcatc |
42031331 |
T |
|
| Q |
218 |
tc |
219 |
Q |
| |
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|| |
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|
| T |
42031330 |
tc |
42031329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 42027131 - 42027244
Alignment:
| Q |
20 |
atctattcatcaacaattccttatcatgaatcttctgaattttcgacctcttctcttagtcatgttttccatatctgttttacagagaaacagctaaaac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
42027131 |
atctattcatcaacaattccttatcatgaatcttctgaattttcgacctcttctcttagtcatgttttcgatatctgttttatagagaaacagctaaaac |
42027230 |
T |
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| Q |
120 |
cctaaatcccaaaa |
133 |
Q |
| |
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|||||||||||||| |
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| T |
42027231 |
cctaaatcccaaaa |
42027244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 5997450 - 5997251
Alignment:
| Q |
20 |
atctattcatcaacaattccttatcatgaatcttctgaattttcgacctcttctcttagtcatgttttccatatctgttttacagagaaacagctaaaac |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| |
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| T |
5997450 |
atctattcatcaacaatttcttatcatgaatcttctgaattttcgacctcttctctcaatcatgttttcgatatctgttttacagagaaacagctaaaac |
5997351 |
T |
|
| Q |
120 |
cctaaatcccaaaaacacataaattagtcatgattattattttgatttgggatttcagtttccaatttcggctttatcatcccattgtatctctcatctc |
219 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5997350 |
cctaaatcccaaaaacacataaattagtcacgattattattttgatttgggatttcaattttcaatttcggctttatcatcccattgtatctctcatctc |
5997251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 43 - 198
Target Start/End: Complemental strand, 17618949 - 17618790
Alignment:
| Q |
43 |
tcatgaatcttctgaattt----tcgacctcttctcttagtcatgttttccatatctgttttacagagaaacagctaaaaccctaaatcccaaaaacaca |
138 |
Q |
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||||||||||||| ||||| |||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
17618949 |
tcatgaatcttcttaatttatattcgacctcttctcttaatcatgttttcgatatttgttttactgagaaacagctaaaaccctaaattccaaaaacaca |
17618850 |
T |
|
| Q |
139 |
taaattagtcatgattattattttgatttgggatttcagtttccaatttcggctttatca |
198 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||| |
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| T |
17618849 |
gaaattagtcatgatttttattttgatttgggatttctgttttcgatttcggctttatca |
17618790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 12210808 - 12210673
Alignment:
| Q |
43 |
tcatgaatcttctgaattt----tcgacctcttctcttagtcatgttttccatatctgttttacagagaaacagctaaaaccctaaatcccaaaaacaca |
138 |
Q |
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||||||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
12210808 |
tcatgaatcttcttaatttatattcgacctcttctcttaatcatgttttcgatatctgttttactgagaaatagctaaaaccctaaatcccaaaaacaca |
12210709 |
T |
|
| Q |
139 |
taaattagtcatgattattattttgatttgggattt |
174 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
12210708 |
gaaattagtcatgatttttattttgatttgggattt |
12210673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 198
Target Start/End: Original strand, 16101782 - 16101939
Alignment:
| Q |
43 |
tcatgaatcttctgaattt----tcgacctcttctcttagtcatgttttccatatctgttttacagagaaacagctaaaaccctaaatcccaaaaacaca |
138 |
Q |
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||||||||||||| ||||| || ||||||||||||| |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||| |
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| T |
16101782 |
tcatgaatcttcttaatttatattctacctcttctcttaatcatgttttcgatatctgttttactgagaaacaactaaaaccctaaatcccaaaa--aca |
16101879 |
T |
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| Q |
139 |
taaattagtcatgattattattttgatttgggatttcagtttccaatttcggctttatca |
198 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||| |||| |||||| |||||||| |
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|
| T |
16101880 |
gaaattagtcatgatttttattttgatttgagatttctgtttttgatttcgactttatca |
16101939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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