View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14515_low_15 (Length: 217)

Name: NF14515_low_15
Description: NF14515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14515_low_15
NF14515_low_15
[»] chr7 (15 HSPs)
chr7 (1-86)||(6180343-6180428)
chr7 (1-85)||(6105962-6106046)
chr7 (139-201)||(6180258-6180320)
chr7 (128-201)||(6247088-6247161)
chr7 (1-86)||(6234311-6234396)
chr7 (2-86)||(6088787-6088871)
chr7 (139-201)||(6237104-6237166)
chr7 (1-75)||(6247175-6247249)
chr7 (13-86)||(6207893-6207966)
chr7 (139-201)||(6207808-6207870)
chr7 (139-201)||(6234226-6234288)
chr7 (13-86)||(6237189-6237262)
chr7 (129-201)||(6105861-6105933)
chr7 (2-77)||(6094178-6094253)
chr7 (139-201)||(6088711-6088773)


Alignment Details
Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 6180428 - 6180343
Alignment:
Q  1 agtattaaaacatagctttgataatttgatagaagagaacttgcaaaacagttttttgtattgtgcattattatctattgatgatg 86  Q
    ||||||||||| ||| |||||||||||||| ||| ||||| |||||||| ||||||||||||| |||||||| |||||||||||||    
T  6180428 agtattaaaacgtagttttgataatttgatggaaaagaacatgcaaaactgttttttgtattgcgcattattttctattgatgatg 6180343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 6106046 - 6105962
Alignment:
Q  1 agtattaaaacatagctttgataatttgatagaagagaacttgcaaaacagttttttgtattgtgcattattatctattgatgat 85  Q
    ||||||||| | ||||| |||||||||||| ||  |||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  6106046 agtattaaagcctagctatgataatttgatggagaagaacttgcaaaactgttttttgtattgtgcattattatctattaatgat 6105962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 6180320 - 6180258
Alignment:
Q  139 tgagttgatcatgaagctagttgacaaaggacatataaatgggagtatgtgtttggaagaaat 201  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  6180320 tgagttgatcatgaagctagttgatcatggacatataaatgggagtatgtgtttggaagaaat 6180258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 6247161 - 6247088
Alignment:
Q  128 attgaaaaatgtgagttgatcatgaagctagttgacaaaggacatataaatgggagtatgtgtttggaagaaat 201  Q
    |||||||||  |||||||||||||||| |||||||||| || || |||||||||||||||||||||||||||||    
T  6247161 attgaaaaagatgagttgatcatgaagttagttgacaatgggcaaataaatgggagtatgtgtttggaagaaat 6247088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 6234396 - 6234311
Alignment:
Q  1 agtattaaaacatagctttgataatttgatagaagagaacttgcaaaacagttttttgtattgtgcattattatctattgatgatg 86  Q
    ||||||||||  ||||| |||||||||||| ||| |  ||||||||||| ||||||||||||| |||||||| |||||||||||||    
T  6234396 agtattaaaatgtagctatgataatttgatggaaaaagacttgcaaaactgttttttgtattgcgcattattttctattgatgatg 6234311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 6088871 - 6088787
Alignment:
Q  2 gtattaaaacatagctttgataatttgatagaagagaacttgcaaaacagttttttgtattgtgcattattatctattgatgatg 86  Q
    ||||||| || ||| | ||||||||||||||||||  ||||||| ||| ||||||||||||||||| ||||||||| ||||||||    
T  6088871 gtattaagacgtagttatgataatttgatagaagaagacttgcagaactgttttttgtattgtgcactattatctaatgatgatg 6088787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 6237166 - 6237104
Alignment:
Q  139 tgagttgatcatgaagctagttgacaaaggacatataaatgggagtatgtgtttggaagaaat 201  Q
    ||||||||||||||||||||||||||| ||||| ||||||| || ||||| ||||||||||||    
T  6237166 tgagttgatcatgaagctagttgacaatggacaaataaatgagaatatgtctttggaagaaat 6237104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6247249 - 6247175
Alignment:
Q  1 agtattaaaacatagctttgataatttgatagaagagaacttgcaaaacagttttttgtattgtgcattattatc 75  Q
    ||||||||||| ||| ||||||||||| || ||| ||||| |||||||  |||||||||||||||||||||||||    
T  6247249 agtattaaaacgtagttttgataatttaatggaaaagaacctgcaaaattgttttttgtattgtgcattattatc 6247175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 6207966 - 6207893
Alignment:
Q  13 tagctttgataatttgatagaagagaacttgcaaaacagttttttgtattgtgcattattatctattgatgatg 86  Q
    ||||| |||||||||||| ||| |  ||||||||||| ||||||||||||| |||||||| |||||||||||||    
T  6207966 tagctatgataatttgatggaaaaagacttgcaaaactgttttttgtattgcgcattattttctattgatgatg 6207893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 6207870 - 6207808
Alignment:
Q  139 tgagttgatcatgaagctagttgacaaaggacatataaatgggagtatgtgtttggaagaaat 201  Q
    ||||||||||||||||||||||||||| ||||| ||||||| || ||||| | ||||||||||    
T  6207870 tgagttgatcatgaagctagttgacaatggacagataaatgagaatatgtctctggaagaaat 6207808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 6234288 - 6234226
Alignment:
Q  139 tgagttgatcatgaagctagttgacaaaggacatataaatgggagtatgtgtttggaagaaat 201  Q
    ||||||||||||||||||||||||||| ||||| ||||||| || ||||| | ||||||||||    
T  6234288 tgagttgatcatgaagctagttgacaatggacagataaatgagaatatgtctctggaagaaat 6234226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 6237262 - 6237189
Alignment:
Q  13 tagctttgataatttgatagaagagaacttgcaaaacagttttttgtattgtgcattattatctattgatgatg 86  Q
    ||||| |||||||||||| ||| |  ||||||| ||| ||||||||||||| |||||||| |||||||||||||    
T  6237262 tagctatgataatttgatggaaaaagacttgcagaactgttttttgtattgcgcattattttctattgatgatg 6237189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 6105933 - 6105861
Alignment:
Q  129 ttgaaaaatgtgagttgatcatgaagctagttgacaaaggacatataaatgggagtatgtgtttggaagaaat 201  Q
    ||||||||  ||||||||||||||||||||||||  | ||  | |||||||  ||||||||||||||||||||    
T  6105933 ttgaaaaagatgagttgatcatgaagctagttgatcatgggaagataaatgatagtatgtgtttggaagaaat 6105861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 6094253 - 6094178
Alignment:
Q  2 gtattaaaacatagctttgataatttgatagaagagaacttgcaaaacagttttttgtattgtgcattattatcta 77  Q
    ||||||||||  || | |||||||||||| ||  | |||||||||||| | ||||||||||||||| |||||||||    
T  6094253 gtattaaaacgcagttatgataatttgattgataaaaacttgcaaaactgctttttgtattgtgcactattatcta 6094178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 6088773 - 6088711
Alignment:
Q  139 tgagttgatcatgaagctagttgacaaaggacatataaatgggagtatgtgtttggaagaaat 201  Q
    |||||||||||||||||| ||||||||   ||  |||||||||| || |||||||||||||||    
T  6088773 tgagttgatcatgaagcttgttgacaataaactgataaatgggaataagtgtttggaagaaat 6088711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University