View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14515_low_3 (Length: 422)
Name: NF14515_low_3
Description: NF14515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14515_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 44907689 - 44908084
Alignment:
| Q |
18 |
aaacacagtattaacaatacacagtatcaaagttca-------cacatattccatttactcaacagccatggattggttttcatggctatcaaaaaccaa |
110 |
Q |
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| T |
44907689 |
aaacacagtattaacaatacacagtatcaaagttcacacttcacacatattccatttactcaacagccatggattggttttcatggctatcaaaaaccaa |
44907788 |
T |
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| Q |
111 |
tcttgagccatctcttgtatatgagtatggccttgtctttgcacaaaacgagcttgaagaagaagacatgttttacttcaaccatgagtttctccaaagc |
210 |
Q |
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| T |
44907789 |
tcttgagccatctcttgtatatgagtatggccttgtctttgcacaaaacgagcttgaagaagaagacatgttttacttcaaccatgagtttctccaaagc |
44907888 |
T |
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| Q |
211 |
atgggaatctccatagccaaacacagattagaaattctcaagcttgctaaaaaagacaagagaaagagtccacacacagttgcaaaatttgttgctgcaa |
310 |
Q |
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| T |
44907889 |
atgggaatctccatagccaaacacagattagaaattctcaagcttgctaaaaaagacaagagaaagagtccacacacagttgcaaaatttgttgctgcaa |
44907988 |
T |
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| Q |
311 |
tcaagaggacaaagaagtacttagctaattatgttaggactttgactcatactgaagaatcagcacttatggtgatgccaactaggcctaatggtg |
406 |
Q |
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| T |
44907989 |
tcaagaggacaaagaagtacttagctaattatgttaggactttgactcatactgaagaatcagcacttatggtgatgccaactaggcctaatggtg |
44908084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 22537670 - 22537599
Alignment:
| Q |
185 |
acttcaaccatgagtttctccaaagcatgggaatctccatagccaaacacagattagaaattctcaagcttg |
256 |
Q |
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| T |
22537670 |
acttcaaccacgagtttcttcaaagcatgggaatttcaatagccaaacacaggctagaaattctcaatcttg |
22537599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 77 - 266
Target Start/End: Complemental strand, 2051822 - 2051633
Alignment:
| Q |
77 |
ccatggattggttttcatggctatcaaaaaccaatcttgagccatctcttgtatatgagtatggccttgtctttgcacaaaacgagcttgaagaagaaga |
176 |
Q |
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| T |
2051822 |
ccatggattggttttcttggctttcaaaaacaaaccttgatccatctcttgtgtatgagtatggtctcacttttgcacacaatgagctagaacaagaaga |
2051723 |
T |
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| Q |
177 |
catgttttacttcaaccatgagtttctccaaagcatgggaatctccatagccaaacacagattagaaattctcaagcttgctaaaaaaga |
266 |
Q |
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| T |
2051722 |
catggtttacttcaaccatgaatttctccaaagcatgggaatctccatagccaaacacaggctagaaattctcaaacttgcaagaaaaga |
2051633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 48069832 - 48069900
Alignment:
| Q |
183 |
ttacttcaaccatgagtttctccaaagcatgggaatctccatagccaaacacagattagaaattctcaa |
251 |
Q |
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| T |
48069832 |
ttacttcaaccatgagtttctacaaagcatgggaatctcaatagccaaacacagactagagattctcaa |
48069900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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