View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14515_low_4 (Length: 422)
Name: NF14515_low_4
Description: NF14515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14515_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 405
Target Start/End: Original strand, 47048148 - 47048558
Alignment:
| Q |
15 |
atgaaggttgatggtagagagaatggtgggaagaagagtgattctgttatgttttcgttgggtttgacagttggtggtcctgttgttttgaaagttcctg |
114 |
Q |
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| T |
47048148 |
atgaaggttgatggtagagagaatggcgggaagaagactgattctgttatgttttcgttgggtttgacagttggtggtcctgttgttttgaaagttcctg |
47048247 |
T |
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| Q |
115 |
ggagttatcccggtagcattggttttaactcgaatggttctgtttatcttgatggtaagtaattattcactttcctcgagtttatcgttttcaagatcat |
214 |
Q |
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| T |
47048248 |
ggagttatcccggtagcattggttttaactcgaatggttctgtttatcttgatggtaagtaattattcactttcctcgagtttatcgttttcaagatcat |
47048347 |
T |
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| Q |
215 |
tcatgtagtagcattttagcagagacattgattctgtttgaactgaaatatttgagcttatctccagttgtaaacttgtgagatcgtttggg-------- |
306 |
Q |
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| T |
47048348 |
tcatgtagtagcattttagcagagacattgattctgtttgaactgaaatatttgagcttatctccagttgtaaacttgtgagatcgtttgggagaactta |
47048447 |
T |
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| Q |
307 |
------------aataacctcatgttatcagttatgacatattcataagttgtttcacagcttattttcagaaattctttaggataactaatgaaacatt |
394 |
Q |
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| T |
47048448 |
taggtataggttaataacctcatgttatcagttatgacatattcataagttgtttcacagcttattttcagaaattctttaggataactaatgaaacatt |
47048547 |
T |
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| Q |
395 |
tatgttattag |
405 |
Q |
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| T |
47048548 |
tatgttattag |
47048558 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 34290309 - 34290246
Alignment:
| Q |
326 |
ttatgacatattcataagttgtttcacagcttattttcagaaattctttaggataactaatgaaa |
390 |
Q |
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| T |
34290309 |
ttatgacatattcataagttgttt-tcagcttattttcataagttcttcaagatagcttatgaaa |
34290246 |
T |
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