View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14515_low_8 (Length: 324)

Name: NF14515_low_8
Description: NF14515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14515_low_8
NF14515_low_8
[»] chr7 (11 HSPs)
chr7 (1-306)||(4631379-4631684)
chr7 (16-303)||(4667396-4667671)
chr7 (172-234)||(4637378-4637440)
chr7 (172-234)||(4711584-4711646)
chr7 (172-234)||(4864446-4864508)
chr7 (170-247)||(4654004-4654081)
chr7 (172-236)||(4696702-4696766)
chr7 (173-236)||(4644214-4644277)
chr7 (178-247)||(4783353-4783422)
chr7 (178-247)||(4815782-4815851)
chr7 (170-234)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (18-306)||(18925109-18925385)


Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 4631684 - 4631379
Alignment:
Q  1 ttcttccatcaccaatggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631684 ttcttccatcaccaatggccctatttttcttcgcctctatttttatccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtc 4631585  T
Q  101 aaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631584 aaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattg 4631485  T
Q  201 ctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631484 ctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctat 4631385  T
Q  301 gccttc 306  Q
    ||||||    
T  4631384 gccttc 4631379  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 4667671 - 4667396
Alignment:
Q  16 tggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaac 115  Q
    ||||||| |||||||||||||| ||||||||||||||||||||      ||| || |||||||||||||||| |||||||||||||||||||||||||||    
T  4667671 tggccctgtttttcttcgcctccatttttacccaacatcgtat------caaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaac 4667578  T
Q  116 cttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagc 215  Q
    ||||||||||||||||||||||  || || ||||||||| ||||||||| ||||||||||||||||||||||||||| || |     | |   ||||| |    
T  4667577 cttacccttctcaaagactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggagaaac 4667478  T
Q  216 taaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgcc 303  Q
    || || ||||||||||||||||      |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  4667477 tagacgtaactttcattcccaa------aaacacaaaccaattaaatgcttttgctttcatcaacggaattgagattgtgtctatgcc 4667396  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 4637440 - 4637378
Alignment:
Q  172 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 234  Q
    |||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||    
T  4637440 aatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcc 4637378  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 4711584 - 4711646
Alignment:
Q  172 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 234  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4711584 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 4711646  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 4864508 - 4864446
Alignment:
Q  172 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 234  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4864508 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 4654081 - 4654004
Alignment:
Q  170 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 247  Q
    ||||||||||||||||||||||| ||| |    || ||| |||||||||||||||||||||||||||| || ||||||    
T  4654081 acaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaac 4654004  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 4696702 - 4696766
Alignment:
Q  172 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 236  Q
    ||||||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||||    
T  4696702 aatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattccca 4696766  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 4644277 - 4644214
Alignment:
Q  173 atcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 236  Q
    |||| |||||| |||||||| ||||||    |||||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccca 4644214  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 4783353 - 4783422
Alignment:
Q  178 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 247  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4783422  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 4815782 - 4815851
Alignment:
Q  178 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 247  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4815851  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 4673288 - 4673224
Alignment:
Q  170 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 234  Q
    |||||||||||||||| ||| || |||||    || ||||||||||||||||||| |||||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 18925109 - 18925385
Alignment:
Q  18 gccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaacct 117  Q
    |||||||||||||||||||  ||||||||||||||||||||      ||| || ||||||||| | ||||||||||||| |||||||| ||||||||  |    
T  18925109 gccctatttttcttcgccttcatttttacccaacatcgtat------caaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaaccaatgt 18925202  T
Q  118 tacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagcta 217  Q
     ||||||||||| |||||||| ||| | |||||||||  |||||||| |||||||||||| ||||| || ||| |  ||||    |||| ||||||| ||    
T  18925203 cacccttctcaatgactttaaccccgcactttggcttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagtta 18925302  T
Q  218 aacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 306  Q
    || ||||||||||||||   ||| ||   || ||| |||  ||| | ||  ||||||||||||||||||||||| ||||| ||||||||    
T  18925303 aatataactttcattcc---aaacac---cataaatcaaccaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttc 18925385  T

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