View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14515_low_9 (Length: 280)
Name: NF14515_low_9
Description: NF14515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14515_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 2551805 - 2552055
Alignment:
| Q |
19 |
cttaacaaattcatcaagtttgtatcaagaatctgaagggagcattgaaataagtgatcctataatccatgaaattcttcatgatagctcaataggtcaa |
118 |
Q |
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| T |
2551805 |
cttaacaaattcatcaagtttgtatcaagaatctgaagggagcattgaaataagtgatcctataatccatgaaattcttcatgatagctcaataggtcaa |
2551904 |
T |
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| Q |
119 |
atttgttcgagtggacgtaaggatttcgaaggttcttttcgaacaactagaagcgcatctacatcttcatggttaaccaatcctgttgaatataatgaag |
218 |
Q |
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| T |
2551905 |
atttgttcgagtggacgtaaggatttcgaaggttcttttcgaacaactagaagcgcatctacatcttcatggttaaccaatcctgttgattataatgaag |
2552004 |
T |
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| Q |
219 |
aaaatgtctcatctcgaacaaggttgttggttcagatggattctgatgatg |
269 |
Q |
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| T |
2552005 |
aaaatgtctcatctcgaacaaggttgttggttcagatggattctgatgatg |
2552055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 2562760 - 2562843
Alignment:
| Q |
184 |
ttcatggttaaccaatcctgttgaa---tataatgaagaaaatgtctcatctcgaacaaggttgttggttcagatggattctga |
264 |
Q |
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| T |
2562760 |
ttcaaggttaaccaatcatgttgatgattatgatgaggaaaatgtctcatctagaacaaggttgttggttgagatggattctga |
2562843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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