View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14516_high_1 (Length: 424)
Name: NF14516_high_1
Description: NF14516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14516_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 30613003 - 30612595
Alignment:
| Q |
1 |
tacttccacgattttggttagtgccgcaaaatgtcttaaatagaacggtataatgtgtgacttatcccaataatctctttggtgagtgaaaatagtatta |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30613003 |
tacttccacgattttgattagtgccgcaaaatgtcttaaatagaacggtataatctgcgacttatcccaataatctctttggtgagtgaaaatagtatta |
30612904 |
T |
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| Q |
101 |
taatgaaataggttcccaaagaacatgtaagtggggtaagatgctaaatgcattgtttgtcttgggaggaaaggggtccgggaaaaataaaactagacac |
200 |
Q |
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| T |
30612903 |
taatgaaataggttcccaaagaacatgtaagtggggtaagatgctaaatgcattgtttgtcttgggaggaaaggggtccgggaaaaataaaactagacac |
30612804 |
T |
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| Q |
201 |
gtaggaaagttgtggcgagttgcattatgagtggggatgaaatggatgtaacttcaaaattgtgataatttgatgtggaaatatgtgatgatttgggaaa |
300 |
Q |
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| T |
30612803 |
gtaggaaagttgtggcgagttgcattatgagtggggatgaaatggatgtaacttcaaaattgtgataatttgatgtggaaatatgtgatgatttgggaaa |
30612704 |
T |
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| Q |
301 |
agattacatggaatgaaaatggagaagaaaaagcaaagtgaataaatttgtgtcaattcaaaccttggtggtgttgacaaaggaattttcatgttttgtt |
400 |
Q |
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| T |
30612703 |
agattacatggaatgaaaatggagaagaaaaagcaaagtgaataaatttgtgtcaattcaaaccttggtggtgttgacaaaggaattttcatgttttgtt |
30612604 |
T |
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| Q |
401 |
tttcttctt |
409 |
Q |
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| T |
30612603 |
tttcttctt |
30612595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 30621184 - 30621144
Alignment:
| Q |
357 |
ttcaaaccttggtggtgttgacaaaggaattttcatgtttt |
397 |
Q |
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| T |
30621184 |
ttcaaaccttggtggtgttgacaaaggaaatttcatatttt |
30621144 |
T |
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