View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14516_low_1 (Length: 508)
Name: NF14516_low_1
Description: NF14516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14516_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 5 - 493
Target Start/End: Original strand, 38518610 - 38519097
Alignment:
| Q |
5 |
aagaatatctgtcaagatatctgaagaacgagctatataggcaatcagaagggcgtaatggatgaagatgtatgaccaactgcaacaaaatcacattgtt |
104 |
Q |
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| T |
38518610 |
aagaaaatttgtcaagatatctgaagaacgagctatataggcaatcagaagggcgtaatggatgaagatgtatgaccaactgcaacaaaatcacattgtt |
38518709 |
T |
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| Q |
105 |
aaaacatgttttagaaaataaaatatagcatgactcattcactgataagtacagcagccctcttgtaaccctaactagtgcataatcgaaaagctacatc |
204 |
Q |
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| T |
38518710 |
aaaacatgttttagaaaataaaatatagcatgactcattcactgataagtacagcagccctcttgtaaccctaactagtgcataatcgaaaagctacatc |
38518809 |
T |
|
| Q |
205 |
aaccactttgttttaagagaaacaggaacaaatggccgaactctgatgaagccgtgttatgttacgcatattgatttcccatagttttcttgcattaaat |
304 |
Q |
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| T |
38518810 |
aaccactttgttttaagagaaacaggaacaattggccgaactctgatgaagccgtgttatgttacgcatattgatttcccatagttttcttgcattaaat |
38518909 |
T |
|
| Q |
305 |
tttcatagatgattaatgaacttaccatgaaatttgaactcctactgtccctaaagttcttctggccattgatacctggacataatctaaatcaagttac |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38518910 |
tttcatagatgattaatgaacttaccatgaaatttgaactcctactgtccctaaagttcttctggccattgatacctggacataatctaaatcaagttac |
38519009 |
T |
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| Q |
405 |
taatactaatctaaataggtagaatggaaagctaaaaaatttcttgagaacaaaatctccaaaagatagaatatacatctgtcaagttt |
493 |
Q |
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| T |
38519010 |
taataataatctaaataggtagaatggaaagct-aaaattttctcgagaacaaaatctccaaaagatagaatatatatctgtcaagttt |
38519097 |
T |
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