View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14516_low_2 (Length: 475)
Name: NF14516_low_2
Description: NF14516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14516_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 200 - 445
Target Start/End: Complemental strand, 53085897 - 53085653
Alignment:
| Q |
200 |
gaaaaaataattaatttctacgtattgtttcaaaatgaaagtaaattaacacttttaatcattttttccttggaaaaacaatttgtcagccattttttat |
299 |
Q |
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| T |
53085897 |
gaaaaaataattaatttctacgtattgtttccaaatgaa-gtaaattaacacttttaatcattttttccttggaaaaacaatttgtcagccattttttat |
53085799 |
T |
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| Q |
300 |
tggcaacaatattttttcgaaaagaagattaaatggatatagaaaatataaatatgtagaatgatttgtgtgatctaatttgaaatttcaaaggaannnn |
399 |
Q |
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| T |
53085798 |
tggcaacaatattttttcgaaaagaagattaaatggatatagaaaatataaatatgtagaatgatttgtgtgatctaatttgaaatttcaaaggaatttt |
53085699 |
T |
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| Q |
400 |
nnnnnnnnnggttctaattcaaaggattgttatatgagagtgacaa |
445 |
Q |
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| T |
53085698 |
tttgtttttggctctaattcaaaggattgttatatgagagtgacaa |
53085653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 53086038 - 53085950
Alignment:
| Q |
68 |
ccacctaactaactcagctcgcctcgttccgttttgaatggatttagatggtacggacctatacagaggga-cccccgcttttccatcc |
155 |
Q |
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| T |
53086038 |
ccacctaactaactcagctcgcctcattccgttttgagcggatttagacggtacagacctatacagagagaccccccgcttttccatcc |
53085950 |
T |
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