View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14516_low_4 (Length: 283)

Name: NF14516_low_4
Description: NF14516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14516_low_4
NF14516_low_4
[»] chr5 (8 HSPs)
chr5 (64-280)||(5325324-5325542)
chr5 (167-267)||(15029997-15030099)
chr5 (98-237)||(7660983-7661125)
chr5 (192-270)||(31253839-31253917)
chr5 (167-267)||(42478362-42478464)
chr5 (192-270)||(11077474-11077552)
chr5 (197-265)||(26228147-26228215)
chr5 (1-43)||(5325563-5325605)
[»] chr8 (5 HSPs)
chr8 (98-269)||(7406416-7406590)
chr8 (98-221)||(13151491-13151616)
chr8 (197-267)||(22998380-22998450)
chr8 (197-275)||(13104057-13104135)
chr8 (98-263)||(35415052-35415220)
[»] chr2 (4 HSPs)
chr2 (98-277)||(22381756-22381937)
chr2 (98-277)||(22913782-22913963)
chr2 (98-277)||(22999573-22999754)
chr2 (197-265)||(24003200-24003268)
[»] chr1 (9 HSPs)
chr1 (98-275)||(27572071-27572252)
chr1 (100-265)||(51995274-51995441)
chr1 (199-254)||(17888364-17888419)
chr1 (72-243)||(20415929-20416103)
chr1 (207-265)||(33473624-33473682)
chr1 (197-265)||(31038232-31038300)
chr1 (197-267)||(25646724-25646794)
chr1 (98-266)||(18467521-18467697)
chr1 (167-267)||(32907924-32908026)
[»] chr4 (7 HSPs)
chr4 (111-267)||(41908089-41908248)
chr4 (125-275)||(20808989-20809142)
chr4 (137-275)||(27007183-27007323)
chr4 (197-267)||(8016121-8016191)
chr4 (189-275)||(11351498-11351583)
chr4 (197-265)||(32105598-32105666)
chr4 (197-267)||(790755-790825)
[»] chr6 (2 HSPs)
chr6 (98-267)||(12522364-12522536)
chr6 (72-243)||(11715376-11715549)
[»] chr3 (10 HSPs)
chr3 (98-267)||(6472969-6473140)
chr3 (98-267)||(6748344-6748515)
chr3 (189-243)||(4611706-4611760)
chr3 (100-265)||(40475096-40475264)
chr3 (197-265)||(818172-818240)
chr3 (98-267)||(6512706-6512877)
chr3 (197-267)||(15819918-15819988)
chr3 (167-265)||(3330632-3330734)
chr3 (98-243)||(6473486-6473633)
chr3 (220-267)||(37978776-37978823)
[»] scaffold0006 (1 HSPs)
scaffold0006 (97-265)||(93029-93199)
[»] chr7 (7 HSPs)
chr7 (197-267)||(7194032-7194102)
chr7 (192-270)||(23846322-23846400)
chr7 (110-265)||(39605797-39605954)
chr7 (192-270)||(46857631-46857709)
chr7 (149-267)||(18995312-18995432)
chr7 (197-252)||(24688257-24688312)
chr7 (201-267)||(24056316-24056382)
[»] scaffold0625 (1 HSPs)
scaffold0625 (149-267)||(1224-1344)
[»] scaffold0044 (1 HSPs)
scaffold0044 (72-270)||(22021-22220)
[»] scaffold0069 (1 HSPs)
scaffold0069 (197-265)||(19389-19457)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 64 - 280
Target Start/End: Complemental strand, 5325542 - 5325324
Alignment:
Q  64 tagggaatataaacttaacctagtgaatgtacgtaaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagta 163  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5325542 taggggatataaacctaacctagtgaatgtacataaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagta 5325443  T
Q  164 tgatgtatggaccaaccatcgacac--aacgaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaac 261  Q
     | |||||||||||||  || ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5325442 cggtgtatggaccaacagtcaacacaaaacgaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgagccaaacaatccaac 5325343  T
Q  262 atcaaacaggtagaataat 280  Q
    |||| ||||||||||||||    
T  5325342 atcagacaggtagaataat 5325324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 15029997 - 15030099
Alignment:
Q  167 tgtatggaccaaccatcgacacaac--gaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatc 264  Q
    |||||||||||||| || ||||||   | || ||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||| |||||||||    
T  15029997 tgtatggaccaaccgtcaacacaaaatggatccaagaaccaacaactccttgcgacaacaacaagcataacgtctctttcgagccaaacagtccaacatc 15030096  T
Q  265 aaa 267  Q
    |||    
T  15030097 aaa 15030099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 7661125 - 7660983
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaa-caacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaa 194  Q
    ||||||||  || ||||||||| | | |||| |||||||||| |||||||  ||||||||||||||  |  |||||||||||||||| ||||  ||||||    
T  7661125 aaagtgtaagtctacccaatcaggaggtacggaaaaatgaaaacaacactggtggatgtctaaagtgcggcgtatggaccaaccatcaacacggaacgaa 7661026  T
Q  195 ttcaagaaccaacaactccttacaacaacaacaagcataacgt 237  Q
    | |||||||||||||| ||||  || | |||||||||||||||    
T  7661025 tccaagaaccaacaaccccttgtaatagcaacaagcataacgt 7660983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 31253839 - 31253917
Alignment:
Q  192 gaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaacag 270  Q
    |||| ||||||||||||||||||| | |||||||||||| |||| ||||| | ||| |||||| |||||||||||||||    
T  31253839 gaatccaagaaccaacaactccttgcgacaacaacaagcctaacatctctatcgagccaaacagtccaacatcaaacag 31253917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 42478362 - 42478464
Alignment:
Q  167 tgtatggaccaaccatcgacacaac--gaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatc 264  Q
    |||||||||||||| || ||||||   | || ||||||||||||||| ||||| ||| ||||||| ||||||||| ||| ||| |||||| |||||||||    
T  42478362 tgtatggaccaaccgtcaacacaaaatggatccaagaaccaacaacttcttacgacagcaacaagtataacgtctttttcgagtcaaacagtccaacatc 42478461  T
Q  265 aaa 267  Q
    |||    
T  42478462 aaa 42478464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 11077474 - 11077552
Alignment:
Q  192 gaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaacag 270  Q
    |||| ||||||||||||||||||| | ||| |||||||| ||| |||||||| ||| |||||| |||||||||| ||||    
T  11077474 gaatccaagaaccaacaactccttgcgacagcaacaagcctaatgtctctttcgagccaaacagtccaacatcagacag 11077552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 26228215 - 26228147
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatca 265  Q
    |||||||||||||||| || ||||||||||||||| ||| ||||||| ||| |||| | ||||||||||    
T  26228215 caagaaccaacaactcattgcaacaacaacaagcacaacatctctttcgagccaaatagtccaacatca 26228147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5325605 - 5325563
Alignment:
Q  1 caactaagttgggatgtctcgcaaattcttgtccttatcaagg 43  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  5325605 caactaagttgggatgtctcgcagattctggtccttatcaagg 5325563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 98 - 269
Target Start/End: Original strand, 7406416 - 7406590
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaa-caacactaatggatgtctaaagtatgatgtatggaccaaccatcgacacaa--cgaa 194  Q
    ||||||||| ||||| |||||| ||||||||||||||||||| |||| ||| |  ||||||||| | || |||||||||||||| || ||||||  ||||    
T  7406416 aaagtgtatgtcaactcaatcaggtgatacgaaaaaatgaaaacaacgctagtttatgtctaaaatgtggtgtatggaccaaccgtcaacacaaaacgaa 7406515  T
Q  195 ttcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaaca 269  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  7406516 ttcaagaaccaacaactacttgcaacaacaacaagcataacgtctcttttgagccaaaaagtccaacatcaaaca 7406590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 13151491 - 13151616
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaat 195  Q
    ||||||||| |||||||||||| | ||||| |||||   ||||||||||||||||||| ||||||  | |||||||||||||| || ||||  |||||||    
T  13151491 aaagtgtatgtcaacccaatcaggggatacaaaaaataaaaacaacactaatggatgtataaagtgcggtgtatggaccaaccgtcaacacagaacgaat 13151590  T
Q  196 tcaagaaccaacaactccttacaaca 221  Q
     ||| ||||||||||| ||| |||||    
T  13151591 ccaataaccaacaacttcttgcaaca 13151616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 22998380 - 22998450
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
    |||||||||||| |||||| | ||| ||||||||||||||||||||| ||| |||||| ||||||||||||    
T  22998380 caagaaccaacagctccttgcgacagcaacaagcataacgtctctttcgagccaaacagtccaacatcaaa 22998450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 275
Target Start/End: Complemental strand, 13104135 - 13104057
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaacaggtaga 275  Q
    ||||||||||||||||| |  |||| |||||||| ||| || ||||| |||  ||||  ||||||||||||||||||||    
T  13104135 caagaaccaacaactccgtgaaacatcaacaagcctaatgtttctttcgagctaaactgtccaacatcaaacaggtaga 13104057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 263
Target Start/End: Original strand, 35415052 - 35415220
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaa-caacactaatggatgtctaaagtatgatgtatggaccaaccatcgaca--caacgaa 194  Q
    ||||||||  || ||||||||| ||||   |||||||||||| |||||| | ||||||||||||||     ||||||||||||| || |||   ||||||    
T  35415052 aaagtgtaagtctacccaatcaggtgagttgaaaaaatgaaaacaacaccagtggatgtctaaagtgcagcgtatggaccaaccgtcaacatgaaacgaa 35415151  T
Q  195 ttcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacat 263  Q
    | |||||| |||||||| ||| |||||| |  || || | ||||||||| |||  ||||||||||||||    
T  35415152 tccaagaatcaacaactacttgcaacaaaacaaaccacatcgtctctttcgagctaaacaatccaacat 35415220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 277
Target Start/End: Complemental strand, 22381937 - 22381756
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaat 195  Q
    ||||||||| |||||||||||| || |||||||||||| ||||| ||||| |||||||||||||| || |||||| ||||||| || |||   |||||||    
T  22381937 aaagtgtatgtcaacccaatcaggtaatacgaaaaaataaaacagcactagtggatgtctaaagtgtgttgtatgaaccaaccgtcaacatgaaacgaat 22381838  T
Q  196 tcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaacaggtagaat 277  Q
     |||||||||||||||| || || |||||||||||||||||||| ||| |||  |||||||||| | |||||||||||||||    
T  22381837 ccaagaaccaacaactcgttgcagcaacaacaagcataacgtctttttcgagtgaaacaatccagcttcaaacaggtagaat 22381756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 277
Target Start/End: Complemental strand, 22913963 - 22913782
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaat 195  Q
    ||||||||| |||||||||||| || |||||||||||| ||||| ||||| |||||||||||||| || |||||| ||||||| || |||   |||||||    
T  22913963 aaagtgtatgtcaacccaatcaggtaatacgaaaaaataaaacagcactagtggatgtctaaagtgtgttgtatgaaccaaccgtcaacatgaaacgaat 22913864  T
Q  196 tcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaacaggtagaat 277  Q
     |||||||||||||||| || || |||||||||||||||||||| ||| |||  |||||||||| | |||||||||||||||    
T  22913863 ccaagaaccaacaactcgttgcagcaacaacaagcataacgtctttttcgagtgaaacaatccagcttcaaacaggtagaat 22913782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 98 - 277
Target Start/End: Original strand, 22999573 - 22999754
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaat 195  Q
    ||||||||| ||||||||||||  | ||| | |||||| ||||| ||||| |||||| ||||||| || |||||| ||||||| || |||   |||||||    
T  22999573 aaagtgtatgtcaacccaatcagataatatggaaaaataaaacagcactagtggatgcctaaagtgtggtgtatgaaccaaccgtcaacatggaacgaat 22999672  T
Q  196 tcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaacaggtagaat 277  Q
      ||||||||||||||| || || |||||||||||||||||||| ||| |||  |||||||||||| |||||||||||||||    
T  22999673 ctaagaaccaacaactcgttgcagcaacaacaagcataacgtctatttcgagtgaaacaatccaacttcaaacaggtagaat 22999754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 24003200 - 24003268
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatca 265  Q
    ||||||||||||||||||| | ||| |||||| |||||||||||||| ||| |||||| ||||||||||    
T  24003200 caagaaccaacaactccttgcgacagcaacaaacataacgtctctttcgagccaaacagtccaacatca 24003268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 98 - 275
Target Start/End: Complemental strand, 27572252 - 27572071
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaa--caacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacga 193  Q
    ||||||||| |||||||||| | ||||||| ||||||  |||  |||||||||||||||| ||||||  | |||||||||||||| || |||   |||||    
T  27572252 aaagtgtatgtcaacccaatgaggtgatacaaaaaaaataaaaacaacactaatggatgtataaagtgcgttgtatggaccaaccgtcaacaaggaacga 27572153  T
Q  194 attcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaacaggtaga 275  Q
    || |||||||||||||||| || ||||||||||||||||||| ||||||| ||| ||||||||||||||||||| |||||||    
T  27572152 atccaagaaccaacaactctttgcaacaacaacaagcataacatctctttcgagccaaacaatccaacatcaaataggtaga 27572071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 265
Target Start/End: Original strand, 51995274 - 51995441
Alignment:
Q  100 agtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacacaacgaatt--- 196  Q
    |||||||  ||||||||||  ||||||| ||||| | |||||||||  ||||||| ||||| |||| ||||||||||| || || |||| |  ||||       
T  51995274 agtgtatgccaacccaatcgggtgatacaaaaaattaaaacaacaccgatggatgcctaaaatatggtgtatggaccatccgtcaacacga--aattgaa 51995371  T
Q  197 -caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatca 265  Q
     ||||||||||||||||||| | ||| ||||||||| | ||||||||| ||| |||||||||||||||||    
T  51995372 ccaagaaccaacaactccttgcgacagcaacaagcaaagcgtctctttcgagacaaacaatccaacatca 51995441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 17888364 - 17888419
Alignment:
Q  199 agaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaaca 254  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||    
T  17888364 agaaccaacaactccttgcagcaacaacaagcataacgtctcttttgagccaaaca 17888419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 20415929 - 20416103
Alignment:
Q  72 ataaacttaacctagtgaatgtacgtaaagtgtatctcaacccaatcaagtgatacgaaaaaat-gaaacaacactaatggatgtctaaagtatgatgta 170  Q
    |||||||||||| ||| |||  ||  ||||||||  |||||||||||| |||||||||||||||  ||||||||||  |||||||||||| | || ||||    
T  20415929 ataaacttaacccagtaaatccacacaaagtgtacgtcaacccaatcaggtgatacgaaaaaataaaaacaacactggtggatgtctaaaatgtggtgta 20416028  T
Q  171 tggaccaaccatcgacac--aacgaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttt 243  Q
    || ||| || ||  ||||  ||||||| ||| || |||  ||||||| ||||||||||| |||||| ||||||||    
T  20416029 tgaacccactattaacacgaaacgaatccaataatcaatcactccttgcaacaacaacatgcataatgtctcttt 20416103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 33473682 - 33473624
Alignment:
Q  207 caactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatca 265  Q
    ||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||    
T  33473682 caactccttgcgacaacaacaagcatgacgtctcttttgagccaaacaatccaacatca 33473624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 31038232 - 31038300
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatca 265  Q
    ||||||||| ||||||||| | |||||||||||||||| |||||||| ||| |||||| ||||||||||    
T  31038232 caagaaccagcaactccttgcgacaacaacaagcataatgtctctttcgagccaaacagtccaacatca 31038300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 25646724 - 25646794
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
    ||||||||||||||||||| | ||| ||||||||||| ||||||||| |||  ||| ||||||||||||||    
T  25646724 caagaaccaacaactccttgcgacagcaacaagcatagcgtctctttcgagctaaaaaatccaacatcaaa 25646794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 266
Target Start/End: Original strand, 18467521 - 18467697
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaa--cactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacga 193  Q
    |||||| || |||||| ||||| || |||||||||||  ||| ||  ||| | |||||||||||||| |  |||||||||||||| |  ||||  |||||    
T  18467521 aaagtgaatttcaacctaatcaggtaatacgaaaaaagaaaaaaaaacaccagtggatgtctaaagtgtagtgtatggaccaaccgtaaacacaaaacga 18467620  T
Q  194 attcaaga----accaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaa 266  Q
    ||||||||    |||||||||| ||| ||||| |||||| |||||| ||||||| ||| |||||| || ||||||||    
T  18467621 attcaagaacgtaccaacaacttcttgcaacagcaacaaacataacatctctttcgagccaaacagtcaaacatcaa 18467697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 32908026 - 32907924
Alignment:
Q  167 tgtatggaccaaccatcgacac--aacgaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatc 264  Q
    |||||||||||||| || ||||  || | || |||||||| |||||||||| | |||||||||||||||| |||||  | ||| ||||||||| ||||||    
T  32908026 tgtatggaccaaccgtcaacacgaaatggatccaagaaccgacaactccttgcgacaacaacaagcataatgtctccatcgagccaaacaatctaacatc 32907927  T
Q  265 aaa 267  Q
    |||    
T  32907926 aaa 32907924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 111 - 267
Target Start/End: Complemental strand, 41908248 - 41908089
Alignment:
Q  111 acccaatcaagtgatacgaaaaaatgaaa-caacactaatggatgtctaaagtatgatgtatggaccaaccatcgacacaa--cgaattcaagaaccaac 207  Q
    ||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||  || ||||||||||||| || ||||||  |||||||||||||||||    
T  41908248 acccaatcaggtgatacgaaagaatgaaaacaacactagtggatgtctaaagtgcgacgtatggaccaaccgtcaacacaaaacgaattcaagaaccaac 41908149  T
Q  208 aactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
    |||| ||| || |||||||||||||||| ||||||| |||  |||| |||||||||||||    
T  41908148 aacttcttgcagcaacaacaagcataacatctctttcgagctaaactatccaacatcaaa 41908089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 125 - 275
Target Start/End: Complemental strand, 20809142 - 20808989
Alignment:
Q  125 tacgaaaaaatgaaa-caacactaatggatgtctaaagtatgatgtatggaccaaccatcgacaca--acgaattcaagaaccaacaactccttacaaca 221  Q
    ||||||||||||||| |||||| | |||||||||||| |  | ||||||||||||||||| |||||  |||| | ||| ||||||||||||||| |||||    
T  20809142 tacgaaaaaatgaaaacaacaccagtggatgtctaaaatgcggtgtatggaccaaccatcaacacagaacgagtccaaaaaccaacaactccttgcaaca 20809043  T
Q  222 acaacaagcataacgtctcttttgaggcaaacaatccaacatcaaacaggtaga 275  Q
     |||||||  ||||||||||||||||||||||| ||||||||||||| ||||||    
T  20809042 gcaacaagtctaacgtctcttttgaggcaaacagtccaacatcaaactggtaga 20808989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 137 - 275
Target Start/End: Original strand, 27007183 - 27007323
Alignment:
Q  137 aaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacaca--acgaattcaagaaccaacaactccttacaacaacaacaagcataa 234  Q
    ||||||||||| || |||||||||||  | |||||||||||||| || ||||   |||||| ||||||||||||||| ||| ||| ||||| |||||| |    
T  27007183 aaacaacactagtgaatgtctaaagtgcggtgtatggaccaaccgtcaacacgggacgaatccaagaaccaacaacttcttgcaataacaataagcatta 27007282  T
Q  235 cgtctcttttgaggcaaacaatccaacatcaaacaggtaga 275  Q
    ||||||||| ||| ||||||   ||||||||||||||||||    
T  27007283 cgtctctttcgagccaaacatcacaacatcaaacaggtaga 27007323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 8016121 - 8016191
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  8016121 caagaaccaacaactccttgcgacatcaacaagcataacgtctctttcgagccaaacaatccaacatcaaa 8016191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 11351498 - 11351583
Alignment:
Q  189 aacgaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaacaggtaga 275  Q
    ||||||| ||||||||| || |||||| |||||  |||||||||||||||||||| || ||||||| |||||||||||||| |||||    
T  11351498 aacgaatccaagaaccagcacctccttgcaacaggaacaagcataacgtctctttcga-gcaaacagtccaacatcaaacatgtaga 11351583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 32105598 - 32105666
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatca 265  Q
    ||||||||||||||||||| | ||| ||||||||| | ||||||||| ||| |||||| ||||||||||    
T  32105598 caagaaccaacaactccttgcgacagcaacaagcaaagcgtctctttcgagacaaacagtccaacatca 32105666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 790825 - 790755
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
    |||||||||||||||||||   ||| ||||||||||||| ||| ||| ||| |||||| ||||||||||||    
T  790825 caagaaccaacaactccttgtgacagcaacaagcataacatctttttcgagccaaacagtccaacatcaaa 790755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 267
Target Start/End: Complemental strand, 12522536 - 12522364
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaa-caacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaa 194  Q
    |||||||||  ||||||||||  ||||||| || |||| ||| |||||||| || ||||||||  |  | |||||||||||||| || ||||  || | |    
T  12522536 aaagtgtatgccaacccaatcgggtgatacaaagaaataaaaacaacactagtgaatgtctaacttgcggtgtatggaccaaccgtcaacacgaaatgga 12522437  T
Q  195 ttcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
    | ||||||||||||||||||| | ||||||||||||||||| ||||||| ||| |||||| ||||||||||||    
T  12522436 tccaagaaccaacaactccttgcgacaacaacaagcataacatctctttcgagccaaacagtccaacatcaaa 12522364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 11715376 - 11715549
Alignment:
Q  72 ataaacttaacctagtgaatgtacgtaaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaa-caacactaatggatgtctaaagtatgatgta 170  Q
    |||||| ||||||||| |||  ||| ||||||||  || ||||||||| ||| ||| ||||||||||| ||||||||  ||| |||||||||  |  |||    
T  11715376 ataaacctaacctagtaaatccacgcaaagtgtaagtctacccaatcaggtggtac-aaaaaatgaaaacaacactaggggaagtctaaagtgcggcgta 11715474  T
Q  171 tggaccaaccatcgacacaa--cgaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttt 243  Q
    |||| ||||| || |||||   | ||| |||||||||||||||| || ||| | |||||||| ||||||||||||    
T  11715475 tggatcaaccgtcaacacagatcaaatccaagaaccaacaactctttgcaatagcaacaagcctaacgtctcttt 11715549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 267
Target Start/End: Original strand, 6472969 - 6473140
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaat 195  Q
    ||||||||| |||||||||||  ||||||| || |||| |||||||||  ||| ||||||||  |  | |||||||||||||| || ||||  || | ||    
T  6472969 aaagtgtatgtcaacccaatcgggtgatacaaagaaataaaacaacaccgatgaatgtctaacttgcggtgtatggaccaaccgtcaacacgaaatggat 6473068  T
Q  196 tcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
      |||||||||||||||||| ||||||||||||| |||| |||||||| ||| |||||| |||| |||||||    
T  6473069 caaagaaccaacaactccttgcaacaacaacaagaataatgtctctttcgagccaaacagtccatcatcaaa 6473140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 267
Target Start/End: Complemental strand, 6748515 - 6748344
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaat 195  Q
    ||||||||| |||||||||||  ||||||| || |||| |||||||||   || |||| |||  |  | |||||||||||||| || ||||  || | ||    
T  6748515 aaagtgtatgtcaacccaatcgggtgatacaaagaaataaaacaacaccggtgaatgtttaacttgcggtgtatggaccaaccgtcaacacgaaatggat 6748416  T
Q  196 tcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
     ||||||||||||||||||| ||||||||||||| |||| |||||||| |||  |||||||||| |||||||    
T  6748415 ccaagaaccaacaactccttgcaacaacaacaagaataatgtctctttcgagctaaacaatccatcatcaaa 6748344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 4611706 - 4611760
Alignment:
Q  189 aacgaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttt 243  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||    
T  4611706 aacgaatccaagaaccaacaactccttgcaacaacaacaagcataatgtctcttt 4611760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 265
Target Start/End: Complemental strand, 40475264 - 40475096
Alignment:
Q  100 agtgtatctcaacccaatcaagtgatacgaaaaaatgaaa-caacactaatggatgtctaaagtatgatgtatggaccaaccatcgacacaacgaatt-- 196  Q
    |||||||  ||||||||||  ||||||| ||||||| ||| ||||||   |||||| ||||  |||||||||||||||| || || ||||   |||||      
T  40475264 agtgtatgccaacccaatcgggtgatacaaaaaaatcaaaacaacaccggtggatgcctaatatatgatgtatggaccatccgtcaacacg--gaattga 40475167  T
Q  197 --caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatca 265  Q
      ||||||||||||||||||| | ||||||||||||| ||| ||||||| ||| |||||| ||||||||||    
T  40475166 accaagaaccaacaactccttgcgacaacaacaagcaaaacatctctttcgagacaaacagtccaacatca 40475096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 818172 - 818240
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatca 265  Q
    ||||||||||||||||||| | ||| ||||||||| | ||||||||| ||| |||||||||||||||||    
T  818172 caagaaccaacaactccttgcgacagcaacaagcaaagcgtctctttcgagacaaacaatccaacatca 818240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 267
Target Start/End: Original strand, 6512706 - 6512877
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaat 195  Q
    ||||||||| ||||||||||  ||| |||| || |||| |||||||||   || ||||||||  |  | |||||||||||||| || ||||  || | ||    
T  6512706 aaagtgtatgtcaacccaattgagtaatacaaagaaataaaacaacaccggtgaatgtctaacttgcggtgtatggaccaaccgtcaacacgaaatggat 6512805  T
Q  196 tcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
     |||||||||||||||| || |||||||| |||| |||| |||||||| ||| |||||| |||| |||||||    
T  6512806 ccaagaaccaacaactctttgcaacaacagcaagaataatgtctctttcgagccaaacagtccagcatcaaa 6512877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 15819988 - 15819918
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
    ||||||||||||||||||| | | |  |||||||||||||||||||| ||| |||||| ||||||||||||    
T  15819988 caagaaccaacaactccttgcgatagaaacaagcataacgtctctttcgagccaaacagtccaacatcaaa 15819918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 3330632 - 3330734
Alignment:
Q  167 tgtatggaccaaccatcgacac--aacgaattcaagaaccaacaactccttacaacaa--caacaagcataacgtctcttttgaggcaaacaatccaaca 262  Q
    ||||||||| |||| |||||||  || |||| ||||||||||||||||||| | |||   |||||||| |||||||||||| ||| |||||| |||||||    
T  3330632 tgtatggacaaaccgtcgacacggaatgaatccaagaaccaacaactccttgcgacatagcaacaagcctaacgtctctttcgagccaaacagtccaaca 3330731  T
Q  263 tca 265  Q
    |||    
T  3330732 tca 3330734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 6473486 - 6473633
Alignment:
Q  98 aaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaat 195  Q
    ||||||||| |||||||||||   |||||| || |||| |||||||||   || ||||||||  |  | |||||||||||||| || ||||  || | ||    
T  6473486 aaagtgtatgtcaacccaatcggatgatacaaagaaataaaacaacaccggtgaatgtctaacttgcggtgtatggaccaaccgtcaacacgaaatggat 6473585  T
Q  196 tcaagaaccaacaactccttacaacaacaacaagcataacgtctcttt 243  Q
     |||||||||||||||| || ||||||||||||| |||| ||||||||    
T  6473586 ccaagaaccaacaactctttgcaacaacaacaagaataatgtctcttt 6473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 37978776 - 37978823
Alignment:
Q  220 caacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
    |||||||||||||| ||||||||| |||  ||||||||||||||||||    
T  37978776 caacaacaagcatagcgtctctttcgagctaaacaatccaacatcaaa 37978823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 97 - 265
Target Start/End: Original strand, 93029 - 93199
Alignment:
Q  97 taaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaa 194  Q
    |||||||||| |||||||||||| || |||| ||||||  ||||||||||| || ||||||||  || | ||||||||| || | |  ||||  || | |    
T  93029 taaagtgtatgtcaacccaatcaggtaatacaaaaaaaaaaaacaacactagtgaatgtctaacatacggtgtatggacaaatcgttaacacggaatgga 93128  T
Q  195 ttcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatca 265  Q
    | |||||||||| |||||||| ||| ||||||||| ||||||||||||| ||| |||||| ||||||||||    
T  93129 tccaagaaccaagaactccttgcaataacaacaagtataacgtctctttcgagccaaacagtccaacatca 93199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 7194032 - 7194102
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||||| ||| |||||| ||||||||||||    
T  7194032 caagaaccaacaactccttgcaacagccacaaacataacgtctctttcgagccaaacagtccaacatcaaa 7194102  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 23846322 - 23846400
Alignment:
Q  192 gaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaacag 270  Q
    |||| ||||||||||||||||||| | ||| |||||||| |||| ||||||| ||| |||||| |||||||||||||||    
T  23846322 gaatccaagaaccaacaactccttgcgacagcaacaagcctaacatctctttcgagccaaacagtccaacatcaaacag 23846400  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 265
Target Start/End: Complemental strand, 39605954 - 39605797
Alignment:
Q  110 aacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaattcaagaaccaac 207  Q
    |||||||||  ||||||| || |||| ||||||||| | || ||||||||  |  | ||||||||| |||| || ||||  || | || |||||||||||    
T  39605954 aacccaatcgggtgatacaaagaaataaaacaacaccagtgaatgtctaacatgcggtgtatggacaaaccgtcaacacggaatgtatccaagaaccaac 39605855  T
Q  208 aactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatca 265  Q
    |||||||| | ||| ||||||| ||||||||||||| ||| |||||| ||||||||||    
T  39605854 aactccttgcgacagcaacaagtataacgtctctttcgagccaaacagtccaacatca 39605797  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 270
Target Start/End: Complemental strand, 46857709 - 46857631
Alignment:
Q  192 gaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaacag 270  Q
    |||| ||||||||||||||||||| | ||| |||||||| |||| ||||||| ||| ||||| ||||||||||||||||    
T  46857709 gaatccaagaaccaacaactccttgcgacagcaacaagcctaacatctctttcgagccaaacgatccaacatcaaacag 46857631  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 18995312 - 18995432
Alignment:
Q  149 tggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttga 246  Q
    ||||||||||| || |||||||||||| || |||| ||||  || | ||  |||||||||||||||||| | |||||||||||||||  |||||||| ||    
T  18995312 tggatgtctaacgtgtgatgtatggactaatcatcaacacgaaatggatctaagaaccaacaactccttgcgacaacaacaagcatagtgtctctttcga 18995411  T
Q  247 ggcaaacaatccaacatcaaa 267  Q
    |  || ||||| |||||||||    
T  18995412 gcaaaccaatctaacatcaaa 18995432  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 24688312 - 24688257
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaa 252  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||| ||| ||||    
T  24688312 caagaaccaacaactccttgcaacagcaacaagtataacgtctctttcgagccaaa 24688257  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 24056382 - 24056316
Alignment:
Q  201 aaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaa 267  Q
    ||||||||||||||| | ||| ||||||||||| ||||||||| |||  ||| ||||||||||||||    
T  24056382 aaccaacaactccttgcgacagcaacaagcatagcgtctctttcgagctaaaaaatccaacatcaaa 24056316  T

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Target: scaffold0625 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 1344 - 1224
Alignment:
Q  149 tggatgtctaaagtatgatgtatggaccaaccatcgacac--aacgaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttga 246  Q
    ||||||||||| || |||||||||||| || |||| ||||  || | ||  |||||||||||||||||| | |||||||||||||||  |||||||| ||    
T  1344 tggatgtctaacgtgtgatgtatggactaatcatcaacacgaaatggatctaagaaccaacaactccttgcgacaacaacaagcatagtgtctctttcga 1245  T
Q  247 ggcaaacaatccaacatcaaa 267  Q
    |  || ||||| |||||||||    
T  1244 gcaaaccaatctaacatcaaa 1224  T

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Target: scaffold0044 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 270
Target Start/End: Complemental strand, 22220 - 22021
Alignment:
Q  72 ataaacttaacctagtgaatgtacgtaaagtgtatctcaacccaatcaagtgatacgaaaaaatgaaacaacactaatggatgtctaaagtatgatgtat 171  Q
    |||||||||||| ||| |||  ||  ||||||||| ||||||||| || ||||||| |||| |  |||||| || | |||||||||||  | || |||||    
T  22220 ataaacttaacccagtcaatccacacaaagtgtatgtcaacccaaacaggtgatacaaaaataa-aaacaataccagtggatgtctaacatgtggtgtat 22122  T
Q  172 ggaccaaccatcgacac--aacgaattcaagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatcaaaca 269  Q
    |||| |||| || ||||  || ||||  |||||||||||||||||| | ||| |||||||| |||| || ||||  || |||||| |||||||||| |||    
T  22121 ggacaaaccgtcaacacggaatgaatcgaagaaccaacaactccttgcgacatcaacaagcctaacatcactttcaagccaaacagtccaacatcagaca 22022  T

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Target: scaffold0069 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 19389 - 19457
Alignment:
Q  197 caagaaccaacaactccttacaacaacaacaagcataacgtctcttttgaggcaaacaatccaacatca 265  Q
    |||||||||| |||||||| | ||| ||| ||| ||||||||||||| ||| |||||| |||| |||||    
T  19389 caagaaccaagaactccttgctacagcaataagtataacgtctctttcgagccaaacagtccagcatca 19457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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