View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14516_low_5 (Length: 281)
Name: NF14516_low_5
Description: NF14516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14516_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 15596504 - 15596754
Alignment:
| Q |
15 |
tagaatacacaaagccttatactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaag |
114 |
Q |
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| T |
15596504 |
tagaatacacaaagccttgtactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaag |
15596603 |
T |
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| Q |
115 |
agacgagtaagaaattttttaagcgccaagttcataaatgagaagactcaagtagtcgatgaagatgtagtaagagcatgatagacgtagttctacctga |
214 |
Q |
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| T |
15596604 |
agacgagtaagaaatttttgaagcgccaagttcaataatgagaagactcaagtagtcgatgaagatgcagtaagagcatgatagacgtagttctacctga |
15596703 |
T |
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| Q |
215 |
ctaagtcaagagagtttagaatcatctctagtatggtagtccggtagttca |
265 |
Q |
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| T |
15596704 |
gtaagtcaagagagtttagaatcgtctctagtatggtagtccagtagttca |
15596754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15596274 - 15596509
Alignment:
| Q |
1 |
cggcaaggaattaatagaatacacaaagccttatactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggtagccgtttccag |
100 |
Q |
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| T |
15596274 |
cggcaaggaattaatagaatacacaaagccttgtactttggaatatgagtttcatgagatacgataagtagtggtcagtcaagctggtagccgtttccag |
15596373 |
T |
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| Q |
101 |
tgagaagtgttaagagacgagtaagaaattttttaagcgccaagttcataaatgagaagactcaagtagtcgatgaagatgtagtaagagcatgatagac |
200 |
Q |
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| T |
15596374 |
tgagaagtgttaagagacgagtaagaaatttttgaagcgccaagttcaataatgagaagactcaagtagtcgatgaagatgcagtaagagcatgatagac |
15596473 |
T |
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| Q |
201 |
gtagttctacctgactaagtcaagagagtttagaat |
236 |
Q |
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| T |
15596474 |
gtagttctacctgagtaagtcaagagagtttagaat |
15596509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 14735044 - 14735154
Alignment:
| Q |
38 |
ttggaatatgagtttcatgagatacgataagtagtggtcagtcaagcgggtagccgtttccagtgagaagtgttaagagacgagtaagaaattttttaag |
137 |
Q |
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| T |
14735044 |
ttggaataggagtttcatgagataggataagtagccgttagtcaagcggttagccatttctagtgagaagtattgagagatgagtaagaaattcttgaag |
14735143 |
T |
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| Q |
138 |
cgccaagttca |
148 |
Q |
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| T |
14735144 |
caccaggttca |
14735154 |
T |
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