View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14517_high_1 (Length: 697)
Name: NF14517_high_1
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14517_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 658; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 6 - 681
Target Start/End: Complemental strand, 44850159 - 44849487
Alignment:
| Q |
6 |
acatcatcatgattatcatatctagtggaatgaatgcacaccttgggtatggagagcctttgattggtttttgtccatatttcctccaagaccaaaaatc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44850159 |
acatcatcatgattatcatatctagtggaatgaatgcacaccttgggtatggagagcctttgattggtttttgtccatatttcctccaagaccaaaaatc |
44850060 |
T |
|
| Q |
106 |
tgaaggaagtccttcattcttcaccttgctaacattctctccaatcctcacagtcacaaccgttttctcaaccattttcctgagacatgcacaacatata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44850059 |
tgaaggaagtccttcattcttcaccttgctaacattctctccaatcctcacagtcacaaccgttttctcaaccattttcctgagacatgcacaacatata |
44849960 |
T |
|
| Q |
206 |
taaaacatgcaagctagctagcaacatcactactttattaccaaaaactagaaaattaaaaaacatgctaataaccaaaccaaatatcaaactctatgtt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44849959 |
taaaacatgcaagctagctagcaacatcactacttta---ccaaaaactagaaaattaaaaaacatgctaataaccaaaccaaatatcaaactctatgtt |
44849863 |
T |
|
| Q |
306 |
ctaagcataactcaccgtttcttagatacttgagattctggtttgagctctaaagatgtctctgactcaagtttgggggaggcattactgtccatagcta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44849862 |
ctaagcataactcaccgtttcttagatacttgagattctggtttgagctctaaagatgtctctgactcaagtttgggggaggcattactgtccatagcta |
44849763 |
T |
|
| Q |
406 |
ccttaaattcaaatgatttcttgcagctgcgattgtgatctgagatttttagatttaagaggaaaataagaagttaaatataatatttgatagagaaatt |
505 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44849762 |
ccttaaattcaaatgatttcttgcagctgcaattgtgatctgagatttttagatttaagaggaaaataagaagttaaatataatatttgatagagaaatt |
44849663 |
T |
|
| Q |
506 |
aatagagtagctagggagggagaaggagaatgaatagataatggcaaattaagtgagcaagttgctatgtctctcttttcttttcattcatttaatataa |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44849662 |
aatagagtagctagggagggagaaggagaatgaatagataatggcaaattaagtgagcaagttgctatgtctctcttttcttttcattcatttaatataa |
44849563 |
T |
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| Q |
606 |
aagcagtgaacaactatgcacgtatcaatgccaccagcccccagcaaccccaccttgcaaattgcaatataataat |
681 |
Q |
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| T |
44849562 |
aagcagtgaacaactatgcacgtatcaatgccaccagcccccagcaaccccaccttgcaaattgcaatataataat |
44849487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 29998944 - 29998879
Alignment:
| Q |
45 |
accttgggtatggagagcctttgattggtttttgtccatatttcctccaagaccaaaaatctgaag |
110 |
Q |
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| T |
29998944 |
accttggatatggtgacccttttataggtttttgtccatatttcctccatgcccatatatctgaag |
29998879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 10923887 - 10923935
Alignment:
| Q |
45 |
accttgggtatggagagcctttgattggtttttgtccatatttcctcca |
93 |
Q |
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||||||| ||||| || ||||||||||||||||| |||||||||||||| |
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| T |
10923887 |
accttggatatggtgaccctttgattggtttttgaccatatttcctcca |
10923935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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