View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14517_high_11 (Length: 237)

Name: NF14517_high_11
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14517_high_11
NF14517_high_11
[»] scaffold0065 (1 HSPs)
scaffold0065 (7-221)||(41215-41429)
[»] scaffold0741 (1 HSPs)
scaffold0741 (4-221)||(5231-5448)
[»] chr5 (2 HSPs)
chr5 (4-221)||(37635743-37635960)
chr5 (30-91)||(21346124-21346185)
[»] chr7 (1 HSPs)
chr7 (4-221)||(26176373-26176590)
[»] chr3 (5 HSPs)
chr3 (4-221)||(20305016-20305233)
chr3 (4-221)||(27540187-27540404)
chr3 (30-210)||(25808653-25808834)
chr3 (26-103)||(14243096-14243173)
chr3 (48-196)||(2290480-2290628)
[»] chr4 (1 HSPs)
chr4 (4-215)||(16599942-16600158)
[»] chr6 (1 HSPs)
chr6 (30-221)||(7653842-7654033)
[»] chr1 (2 HSPs)
chr1 (21-210)||(15200613-15200802)
chr1 (4-210)||(15219578-15219784)
[»] chr2 (1 HSPs)
chr2 (30-196)||(12398349-12398515)
[»] scaffold1590 (1 HSPs)
scaffold1590 (123-169)||(1280-1326)
[»] chr8 (1 HSPs)
chr8 (48-210)||(25819345-25819506)


Alignment Details
Target: scaffold0065 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 41429 - 41215
Alignment:
7 ccacgacaaccggaaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtgtca 106  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
41429 ccacgacaaccgggaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtgtcc 41330  T
107 aaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcatgcggaagt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||| |||||||||    
41329 aaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccggagagtttgtttcatccagtactcctgcggaagt 41230  T
207 tctaacaggtgaatc 221  Q
    ||||||||| |||||    
41229 tctaacaggcgaatc 41215  T

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Target: scaffold0741 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 5448 - 5231
Alignment:
4 aggccacgacaaccggaaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtg 103  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5448 aggccacggcaaccgggaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtg 5349  T
104 tcaaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcatgcgga 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | ||||    
5348 tccaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccggagagtttgttccatccagtactcctacgga 5249  T
204 agttctaacaggtgaatc 221  Q
    |||||||||||| |||||    
5248 agttctaacaggcgaatc 5231  T

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Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 37635743 - 37635960
Alignment:
4 aggccacgacaaccggaaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtg 103  Q
    |||||||| ||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37635743 aggccacggcaaccaggaaaacatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtg 37635842  T
104 tcaaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcatgcgga 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
37635843 tccaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccggagagtttgttccatccagtactcctgcgga 37635942  T
204 agttctaacaggtgaatc 221  Q
    |||||||||||| |||||    
37635943 agttctaacaggcgaatc 37635960  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 21346124 - 21346185
Alignment:
30 ccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaat 91  Q
    |||||||| || ||| ||||||||||||| | ||| || ||||||||||||||||| |||||    
21346124 ccttccctttcgacatcaatttcatgaaagagcttgcgagagaaatccatatcaaccagaat 21346185  T

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Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 26176590 - 26176373
Alignment:
4 aggccacgacaaccggaaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtg 103  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
26176590 aggccacgacaaccgggaaagcatatccttccctgtcaacaacaatttcatgaaaaatcttacgggtgaaatccatatcaactagaattctcgcgtagtg 26176491  T
104 tcaaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcatgcgga 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||| ||||| ||||||    
26176490 tccaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccggagagtttgtttcatccaatactcctgcgga 26176391  T
204 agttctaacaggtgaatc 221  Q
    |||||||||||| |||||    
26176390 agttctaacaggcgaatc 26176373  T

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Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 20305016 - 20305233
Alignment:
4 aggccacgacaaccggaaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtg 103  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
20305016 aggccacgacaaccgggaaagcatatcattccctctcaacaacaatttcatgaaaaatcttacgggaggaatccatatcaactagaattctcgcgtagtg 20305115  T
104 tcaaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcatgcgga 203  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||| |||  |    
20305116 tccaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcctggagagtttgttccatccagtactcctgcaaa 20305215  T
204 agttctaacaggtgaatc 221  Q
    |||||||||||| |||||    
20305216 agttctaacaggcgaatc 20305233  T

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Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 27540187 - 27540404
Alignment:
4 aggccacgacaaccggaaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtg 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||    
27540187 aggccacgacaaccgggaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacaggagaaatccatatcaactagtattctcgcataatg 27540286  T
104 tcaaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcatgcgga 203  Q
    |  |||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
27540287 ttcaaacaatctctttgatgtcgcgttgtctatcacaagaggggtgcccaccgcacttgcaatctcccggagagtttgttccatccagtactcatgcgga 27540386  T
204 agttctaacaggtgaatc 221  Q
    |||||||||||| |||||    
27540387 agttctaacaggcgaatc 27540404  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 210
Target Start/End: Original strand, 25808653 - 25808834
Alignment:
30 ccttccctctcaacaacaatttcatgaaaa-atcttacgggagaaatccatatcaactagaattctcgcgtagtgtcaaaacaatctctttgttgtcgca 128  Q
    |||||||| || |||||||| ||||||||| | |||||||||||||||||||||||| |||||||| || || |||| ||||||   |||||| || |||    
25808653 ccttccctttcgacaacaatctcatgaaaataacttacgggagaaatccatatcaacaagaattcttgcataatgtccaaacaaatgctttgtcgttgca 25808752  T
129 ttgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcatgcggaagttcta 210  Q
    ||||||||||||||||| || |||| ||| | ||||||||| |  |||||  ||||||||| |||||| || || |||||||    
25808753 ttgtctatcacaagaggtgtccccaacgctcctgcaatctctcgaagagtccgttccatccggtactcctgaggtagttcta 25808834  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 14243096 - 14243173
Alignment:
26 atatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtg 103  Q
    |||||||||||| |||||||||||||||||||| | |||| | |  ||||||||||||||||||||||| ||||||||    
14243096 atatccttccctttcaacaacaatttcatgaaagagcttaagtgcaaaatccatatcaactagaattctagcgtagtg 14243173  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 2290480 - 2290628
Alignment:
48 atttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtgtcaaaacaatctctttgttgtcgcattgtctatcacaagagggg 147  Q
    ||||||||||| | |||| | ||||||||||| |||||||||||||  || || || | |||||| | ||| |  || ||||| || |||| |||||| |    
2290480 atttcatgaaataacttatgtgagaaatccatgtcaactagaattcgtgcataatggccaaacaaacgcttcgacgttgcattatcaatcaaaagaggag 2290579  T
148 ttcccaccgcacttgcaatctcccatagagtttgttccatccagtactc 196  Q
    | ||||||||| ||||||||||||  || || |||||||||||||||||    
2290580 tgcccaccgcaattgcaatctcccggagtgtctgttccatccagtactc 2290628  T

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Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 16599942 - 16600158
Alignment:
4 aggccacgacaaccggaaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtg 103  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||    
16599942 aggccacggcaaccgggaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagtactctcgcataatg 16600041  T
104 tcaaaacaatctcttt-----gttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcat 198  Q
    || |||||| ||||||     | |||||| |||||||||||||||||||| ||||| ||||||||||||||||  ||||||||||||||||| ||||| |    
16600042 tccaaacaaactctttaatttgatgtcgcgttgtctatcacaagaggggtgcccactgcacttgcaatctcccggagagtttgttccatccattactcct 16600141  T
199 gcggaagttctaacagg 215  Q
    |||||||||||||||||    
16600142 gcggaagttctaacagg 16600158  T

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Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 7654033 - 7653842
Alignment:
30 ccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtgtcaaaacaatctctttgttgtcgcat 129  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| | || |||| |||||||||||||| |||||  |    
7654033 ccttccctctcaccaacaatttcatgaaaaatcttacgggagaaatccatatcaactagtattctcacataatgtccaaacaatctctttgatgtcgtgt 7653934  T
130 tgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcatgcggaagttctaacaggtgaatc 221  Q
    ||||||||||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||| |||||    
7653933 tgtctatcacaagaggggtgcccactgcacttgcaatctcccggagagtttgttccatccagtactcctgcagaagttctaacaggcgaatc 7653842  T

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Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 15200613 - 15200802
Alignment:
21 aaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtgtcaaaacaatctctttg 120  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||| || || |||| ||||| || |||||    
15200613 aaagcatatccttccctctcgacaacaatttcgtgaaaaatcttacgggagaagtccatatcgactagaattcttgcataatgtctaaacagtcgctttg 15200712  T
121 ttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcatgcggaagttcta 210  Q
      ||||||||||| |||||||||||||| ||||||||||||||||||||||  || || ||||||||||||||||||||||| |||||||    
15200713 acgtcgcattgtcgatcacaagaggggtgcccaccgcacttgcaatctcccgaagtgtctgttccatccagtactcatgcggtagttcta 15200802  T

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Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 15219578 - 15219784
Alignment:
4 aggccacgacaaccggaaaagcatatccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtg 103  Q
    ||||||| | || ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| || || ||    
15219578 aggccacaaaaatcgggaaagcatatccttccctctcgacaacaatttcatgaaaaatcttacgggagaagtccatatcgactagaattcttgcataatg 15219677  T
104 tcaaaacaatctctttgttgtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcatgcgga 203  Q
    || ||| | || |||||  | || |||||| |||||||||||||| ||||||||||||||||||||||  || || |||||||||||||||||||||||     
15219678 tccaaatagtcgctttgacgacgaattgtcgatcacaagaggggtgcccaccgcacttgcaatctcccgaagtgtctgttccatccagtactcatgcggt 15219777  T
204 agttcta 210  Q
    |||||||    
15219778 agttcta 15219784  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 12398349 - 12398515
Alignment:
30 ccttccctctcaacaacaatttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtgtcaaaacaatctctttgttgtcgcat 129  Q
    |||||| | |||||||||||||||||||| | |||||||||||||||||||||||| |||||||| || || |||| |||||| | |||||| ||||| |    
12398349 ccttccttttcaacaacaatttcatgaaataacttacgggagaaatccatatcaacaagaattcttgcataatgtccaaacaaacgctttgtcgtcgcgt 12398448  T
130 tgtctatcacaagaggggttcccaccgcacttgcaatctcccatagagtttgttccatccagtactc 196  Q
    |||||||||||||||| || |||| |   | ||||||||| |  |||||  ||||||||||||||||    
12398449 tgtctatcacaagaggtgtccccaacattcctgcaatctctcgaagagtccgttccatccagtactc 12398515  T

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Target: scaffold1590 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 1326 - 1280
Alignment:
123 gtcgcattgtctatcacaagaggggttcccaccgcacttgcaatctc 169  Q
    ||||| ||||| |||| ||||||||| ||||||||||||||||||||    
1326 gtcgccttgtcaatcaaaagaggggtgcccaccgcacttgcaatctc 1280  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 25819506 - 25819345
Alignment:
48 atttcatgaaaaatcttacgggagaaatccatatcaactagaattctcgcgtagtgtcaaaacaatctctttgttgtcgcattgtctatcacaagagggg 147  Q
    ||||||||||| || ||||| ||||||||||| || |||||||||| ||| || || | ||| |  |  ||||  || ||||| || |||| |||||| |    
25819506 atttcatgaaatattttacgagagaaatccatgtcgactagaattcgcgcataatggccaaataggcg-tttgacgttgcattatcaatcaaaagaggag 25819408  T
148 ttcccaccgcacttgcaatctcccatagagtttgttccatccagtactcatgcggaagttcta 210  Q
    | |||||||||||||||||||||   || || || |||||||||||||| || || |||||||    
25819407 tgcccaccgcacttgcaatctcctgaagtgtctgctccatccagtactcttgagggagttcta 25819345  T

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