View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14517_high_12 (Length: 227)
Name: NF14517_high_12
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14517_high_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 48288481 - 48288660
Alignment:
| Q |
45 |
ctttctttcttccttgacatggatcaaattcaattcattttatgagtatatatgtgtagtttgtgatatatgtaagttcattttatgagcaatgtccttc |
144 |
Q |
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| T |
48288481 |
ctttctttcttccttgacatggatcaaatgcaa---attttatgagtatatatgtgtagtttgtgatatatgtaagttcattttatgagcaatgtccttc |
48288577 |
T |
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| Q |
145 |
tcttggtccaaaaagaaaattgacattgtcaattacttcaaattagtctattnnnnnnntaatgttgtaaatcgtcataatcc |
227 |
Q |
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| T |
48288578 |
tcttggtccaaaaagaaaattgacattgtcaattacttcaaattagtctattaagaaaataatgttgtaaatcgtcataatcc |
48288660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 48288300 - 48288333
Alignment:
| Q |
1 |
catgtgatatatcttgacaaatatgttgtatctg |
34 |
Q |
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| T |
48288300 |
catgtgatatatcttgacaaatatgttgtatctg |
48288333 |
T |
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