View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14517_high_14 (Length: 213)
Name: NF14517_high_14
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14517_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 28933060 - 28933242
Alignment:
| Q |
18 |
aaggtaactatgttacatttctttcataataattggattgcctataatgtttctccattaa----gatatcttctctacctttatatttaggtgaaaaga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
28933060 |
aaggtaactatgttacatttctttcataataattggattgcctataatgtttctccattaattaagatatcttctctacctt-acatttaggtgaaaaga |
28933158 |
T |
|
| Q |
114 |
catcctgtaaagaaaaagtttgatgaggtatgttctactcctgaagtttttattctactccaacaattctatttctacctgcat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28933159 |
catcctgtaaagaaaaagtttgatgaggtatgttctactcctgaagtttttattctactccaacaattctatttctacctgcat |
28933242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 10187360 - 10187411
Alignment:
| Q |
55 |
ttgcctataatgtttctccattaagatatcttctctacctttatatttaggt |
106 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10187360 |
ttgcctacaatgtctctccattaagatatcttctctaccttttcatttaggt |
10187411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 35120973 - 35120900
Alignment:
| Q |
47 |
taattggattgcctataatgtttctccattaagatatcttctctacctttatatttaggtgaaaagacatcctg |
120 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
35120973 |
taattggattgcctacaatatctctccattaagatatcttctctaccttttcatttaggtgaaaagccatcctg |
35120900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 35120849 - 35120804
Alignment:
| Q |
138 |
gaggtatgttctactcctgaagtttttattctactccaacaattct |
183 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
35120849 |
gaggtatattctactcctgatgtttttattctactgtaacaattct |
35120804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University