View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14517_high_7 (Length: 329)
Name: NF14517_high_7
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14517_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 329
Target Start/End: Original strand, 42769602 - 42769924
Alignment:
| Q |
7 |
gtctttaggggtgaaatgtgtgattgtgtcataattgattttgagggaagttagtttgtgcttaactttgaaggaaagccattaatagtctatctatgcg |
106 |
Q |
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| T |
42769602 |
gtctttaggggtgaaaagtgtgaatgtgtcataattgattttgagggaagttagtttgtgcttaactttgaaggaaagccattaatagtctatctatgcg |
42769701 |
T |
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| Q |
107 |
tttggtggagatttatttnnnnnnnnnnnnnnnnnnnnngagtggactctataataagaattgatgtttttggcttattatgattggttagaatttataa |
206 |
Q |
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| T |
42769702 |
tttggtggagatttatttaaaaaagaaaaaagaaaaaaagagtggactctataataagaattgatgtttttggcttattatgattggttagaatttataa |
42769801 |
T |
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| Q |
207 |
tctaacaatataagagtacaagacattatggtctcatataagatacacttgtgtccagtggggctattcctttttgtggtagctatgatttttataagat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769802 |
tctaacaatataagagtacaagacattatggtctcatataagatacacttgtgtctagtggggctattcctttttgtggtagctatgatttttataagat |
42769901 |
T |
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| Q |
307 |
attgcagattatgtctgcatatt |
329 |
Q |
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| T |
42769902 |
attgcagattatgtctgcatatt |
42769924 |
T |
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