View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14517_high_8 (Length: 315)
Name: NF14517_high_8
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14517_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 165 - 307
Target Start/End: Complemental strand, 51452457 - 51452315
Alignment:
| Q |
165 |
actctctaaactctttctcaattcaataaccgttacctttaatttcagattgagaaaatggaaaaattactaagggaatcatcaaaaggacaatcattca |
264 |
Q |
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| T |
51452457 |
actctctaaactctttctcaattcaataaccgttacctttaatttcagattgagagaatggaaaaattactaagggaatcatcaaaaggacaatcattca |
51452358 |
T |
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| Q |
265 |
ccctcgatttttaccaaaaactagccaaaagtttcaagtctgt |
307 |
Q |
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| T |
51452357 |
ccctcgatttttaccaaaaactagccaaaagtttcaagtctgt |
51452315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 51452611 - 51452486
Alignment:
| Q |
17 |
aacataactctgtactttatttgttgcgagagagaaaagagttgagttgtgttgacgatggatcgcttgcgtcctcgcaacagacccattttttccggat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51452611 |
aacataactctgtactttatttgttgcgagagagaaaagagttgagttgtgttgacgatggatcgcttgcgtcctcgcaacagacccattttttccggat |
51452512 |
T |
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| Q |
117 |
tcaccaattctgaggtaccttcctac |
142 |
Q |
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|||||||||||||||||||||||||| |
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| T |
51452511 |
tcaccaattctgaggtaccttcctac |
51452486 |
T |
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