View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14517_low_12 (Length: 303)

Name: NF14517_low_12
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14517_low_12
NF14517_low_12
[»] chr1 (5 HSPs)
chr1 (116-292)||(31070938-31071112)
chr1 (116-218)||(229445-229547)
chr1 (116-193)||(50525699-50525776)
chr1 (219-292)||(229075-229148)
chr1 (239-292)||(50525786-50525839)
[»] chr2 (1 HSPs)
chr2 (116-252)||(5590640-5590774)
[»] chr3 (3 HSPs)
chr3 (176-283)||(27405084-27405189)
chr3 (19-95)||(24672909-24672982)
chr3 (20-95)||(24656537-24656609)
[»] chr5 (1 HSPs)
chr5 (116-218)||(38919564-38919666)
[»] chr7 (1 HSPs)
chr7 (144-231)||(38130442-38130527)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 31070938 - 31071112
Alignment:
Q  116 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 215  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  31070938 agagttgctatacggtacgacaagttaacatacgaatttgcacggcactttcaactaaaggtggtattctcttttaatgggtactaccttacaatattt- 31071036  T
Q  216 atataataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatatacattcttctctgctgc 292  Q
     |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  31071037 -tataataaaacataaacttggcgattatataaacgtttagagaagcaaaacagtgatatacattcttctttgctgc 31071112  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 229547 - 229445
Alignment:
Q  116 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 215  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  229547 agagttgttatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 229448  T
Q  216 ata 218  Q
    |||    
T  229447 ata 229445  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 50525699 - 50525776
Alignment:
Q  116 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaat 193  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50525699 agagttgctatacggtacgacaagttaaaacacgaatttgcacgacactctcaactaaaggtggtattctcttttaat 50525776  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 229148 - 229075
Alignment:
Q  219 taataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatatacattcttctctgctgc 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  229148 taataaaacataaacttggctattatataaacgtctagagaagcaaaacagttatatacattcttctttgctgc 229075  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 50525786 - 50525839
Alignment:
Q  239 tattatataaacgtctagagaagcaaaacagtgatatacattcttctctgctgc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50525786 tattatataaacgtctagagaagcaaaacagtgatatacattcttctttgctgc 50525839  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 116 - 252
Target Start/End: Complemental strand, 5590774 - 5590640
Alignment:
Q  116 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 215  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||   |||| |  | ||||||||||||||||||| || ||||||||||||||||     
T  5590774 agagttgctatacggtacgacaaatcaacacacgaatttgcacgacaacttcaatttcatgtggtattctcttttaatgagtgctaccttacaatattt- 5590676  T
Q  216 atataataaaacataaacttggctattatataaacgt 252  Q
     ||||||||||||| | | ||| || |||||||||||    
T  5590675 -tataataaaacatcatcctggttaatatataaacgt 5590640  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 27405084 - 27405189
Alignment:
Q  176 gtggtattctcttttaatgggtactaccttacaatattttatataataaaacataaacttggctattatataaacgtctagagaagcaaaacagtgatat 275  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||| ||| ||| || ||||||||||| ||||||||  |||| ||||||     
T  27405084 gtggtattctcttttaatgggtgctaccttacaatattt--tataataaaacatcaacatggttaatatataaacgtttagagaaggcaaacggtgataa 27405181  T
Q  276 acattctt 283  Q
    ||||||||    
T  27405182 acattctt 27405189  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 24672909 - 24672982
Alignment:
Q  19 gattgttggaaggggttgttagtgttagaaccttgatactttattccgactgaagccaactctaagctcataagaat 95  Q
    ||||||||||||||||||   |||||  ||||||||||||| ||||| | |||||| ||||||||| ||||||||||    
T  24672909 gattgttggaaggggttg---gtgtttaaaccttgatacttaattccaattgaagctaactctaaggtcataagaat 24672982  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 24656537 - 24656609
Alignment:
Q  20 attgttggaaggggttgttagtgttagaaccttgatactttattccgactgaagccaactctaagctcataagaat 95  Q
    |||||||||||||||||   |||||  ||||||| ||||||| ||| | |||| ||||||||||| ||||||||||    
T  24656537 attgttggaaggggttg---gtgtttaaaccttggtactttactccaattgaacccaactctaaggtcataagaat 24656609  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 38919564 - 38919666
Alignment:
Q  116 agagttgctatacggtacgacaagttaacacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatatttt 215  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||   |||| |  | ||||||||||||||||||| ||  ||||||||||||||||    
T  38919564 agagttgctatacgatacgacaagtcaacacacaaatttgcacgacaacttcaatttcatgtggtattctcttttaatgagtgttaccttacaatatttt 38919663  T
Q  216 ata 218  Q
    |||    
T  38919664 ata 38919666  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 38130527 - 38130442
Alignment:
Q  144 cacacgaatttgcacgacactctcaactaaaggtggtattctcttttaatgggtactaccttacaatattttatataataaaacataa 231  Q
    ||||||||||||||||| ||  ||||||| |  |||  |||||||||||||| | |||| ||| |||||||  |||||||||||||||    
T  38130527 cacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattataatattt--tataataaaacataa 38130442  T

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