View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14517_low_13 (Length: 259)

Name: NF14517_low_13
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14517_low_13
NF14517_low_13
[»] chr3 (11 HSPs)
chr3 (19-259)||(5850991-5851231)
chr3 (19-227)||(5500716-5500924)
chr3 (19-227)||(5487899-5488107)
chr3 (19-201)||(5856085-5856267)
chr3 (19-226)||(5482474-5482678)
chr3 (19-245)||(5804442-5804665)
chr3 (19-224)||(5523584-5523789)
chr3 (25-191)||(5830241-5830404)
chr3 (19-227)||(20341506-20341711)
chr3 (19-230)||(5452630-5452838)
chr3 (19-201)||(5444234-5444413)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 5851231 - 5850991
Alignment:
Q  19 ctttagcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5851231 ctttagcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacat 5851132  T
Q  119 atggcctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5851131 atggcctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaa 5851032  T
Q  219 taagctcaatccatactctattttcattcgaagtaatgatt 259  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5851031 taagctcaatccatactctattttcattcgaagtaatgatt 5850991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 5500716 - 5500924
Alignment:
Q  19 ctttagcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacat 118  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |||||||| ||||| || ||||    
T  5500716 ctttaacataaaaaccacagatgacatgttaggcctattttctggtttctgttgtacacacaatagacccacatgaataaatcttagtatttctgtacat 5500815  T
Q  119 atggcctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaa 218  Q
    ||||| |||||||| ||||||| || |||||| ||||| ||||| |||||||| ||||||||||||||||||| ||||||||| ||| ||||| || ||     
T  5500816 atggcgtcatcatcatataatacgtcagctattaactccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagttacaacatgag 5500915  T
Q  219 taagctcaa 227  Q
    |||||||||    
T  5500916 taagctcaa 5500924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 5487899 - 5488107
Alignment:
Q  19 ctttagcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacat 118  Q
    ||||| |||||| ||| |||||||||||||||||||||||||||||  |||||| ||||||| ||||||||| |||| |||||||||||||| |||||||    
T  5487899 ctttaacataaagaccacagatgacatgttaggcctattttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacat 5487998  T
Q  119 atggcctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaa 218  Q
    |||||||||||||| ||||||| || |||||| ||||| ||||| |||||||| ||||||||| ||||||||| ||||||||| ||| ||||| || ||     
T  5487999 atggcctcatcatcatataatacgtcagctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatgacatcaaagttacaacatgag 5488098  T
Q  219 taagctcaa 227  Q
    |||||||||    
T  5488099 taagctcaa 5488107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 5856267 - 5856085
Alignment:
Q  19 ctttagcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacat 118  Q
    ||||| |||||| ||| |||||||||| |||||||||| |||||||  |||||||||||||| ||||||||| |||| |||||||||||||| |||||||    
T  5856267 ctttaacataaagaccacagatgacatattaggcctatcttctggtagctgttgtacacacaatagaccaacatgaataaatcttattatttctgaacat 5856168  T
Q  119 atggcctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacat 201  Q
    |||| ||||||||||| ||||||||  ||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  5856167 atgggctcatcatcgtctaatatgtctgctattaactctagtggtctttcttcaatccatagtctccatgcctaaaatgacat 5856085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 5482474 - 5482678
Alignment:
Q  19 ctttagcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacat 118  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||||||||||| ||    
T  5482474 ctttaacataaaaaccacagatgacatgttaggcctattttctggtttctgttgaacacacaatagaccaacatgaataaatcttattatttttgaagat 5482573  T
Q  119 atggcctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaa 218  Q
    ||| | |||||||   |  |||||| |||||| ||||| |||| |||| |||| ||||||||||||||||||| ||||||||| ||| ||||| |||||     
T  5482574 atgacatcatcat---acgatatgtcagctattaactccagtgtccttccttcaatccatagtctccatgcctaaaatgacatcaaagttacaacaagag 5482670  T
Q  219 taagctca 226  Q
     |||||||    
T  5482671 aaagctca 5482678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 5804665 - 5804442
Alignment:
Q  19 ctttagcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacat 118  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||| ||    
T  5804665 ctttaacataaaaaccacagatgacatgttaggcctattttctggtttctgttgtacacacaatagcccaacatgaataaatcttattatttttgaagat 5804566  T
Q  119 atggcctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaa 218  Q
    |||   |||| ||| |||||||||| ||| |  |||||   ||||||||  || ||||||||||||||||||| ||||||||| ||| ||| |  ||||     
T  5804565 atg---tcattatcatataatatgtcagcaagcaactcctctggcctttgctcaatccatagtctccatgcctaaaatgacatcaaagttatagtaagag 5804469  T
Q  219 taagctcaatccatactctattttcat 245  Q
    |||||||||||| ||||| ||||||||    
T  5804468 taagctcaatccttactcaattttcat 5804442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 5523584 - 5523789
Alignment:
Q  19 ctttagcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacat 118  Q
    ||||| |||||| ||| |||||||||| |||||||||| |||||||  ||| ||||| |||| ||||||||| |||| |||||||||||||| |||||||    
T  5523584 ctttaacataaagaccacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacat 5523683  T
Q  119 atggcctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaa 218  Q
    |||||||||||||| ||||||||||  ||||| ||||| ||||| |||||||| ||||||||| ||||||||| ||||||||| ||| ||||| || ||     
T  5523684 atggcctcatcatcatataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgccttaaatgacatcaaagttacaacatgag 5523783  T
Q  219 taagct 224  Q
    ||||||    
T  5523784 taagct 5523789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 5830404 - 5830241
Alignment:
Q  25 cataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcc 124  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| |||||||     
T  5830404 cataaaaaccacagatgacatgttaggcctattttctggtttctgttgtacacacaatagaccaacatgaataaatcttattatttttgaagatatggca 5830305  T
Q  125 tcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcct 191  Q
    |||||||   |  |||||| |||||||||||| |||| ||||||||| ||||||| || ||||||||    
T  5830304 tcatcat---acgatatgtcagctatgaactccagtgacctttcttcaatccataatcgccatgcct 5830241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 20341506 - 20341711
Alignment:
Q  19 ctttagcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacat 118  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||| || |||| |||||||||||| | |||||||    
T  20341506 ctttaacataaaaaccacagatgacatgttaggcctattttctgctttctgttgtacacacaataaacccacatgaataaatcttattatatctgaacat 20341605  T
Q  119 atggcctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaa 218  Q
    ||||||||||||   ||| |||||| |||||| |||||   || ||||||||| ||||||||||||||||||| ||||||||| ||  |||||  ||||     
T  20341606 atggcctcatca---tatgatatgtcagctattaactcctttgccctttcttcaatccatagtctccatgcctaaaatgacatcaaggttacaaaaagag 20341702  T
Q  219 taagctcaa 227  Q
    |||||||||    
T  20341703 taagctcaa 20341711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 5452630 - 5452838
Alignment:
Q  19 ctttagcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacat 118  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||  || |||    
T  5452630 ctttaacataaaaaccacagatgacatgttaggcctattttctggtttctgttgtacacacaatagaccaacatgaataaatcttattatttcggagcat 5452729  T
Q  119 atggcctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaa 218  Q
    || |||   ||||||||||| |||| |||||| |||||   ||||||  |||| ||||| ||||||||||||| ||||||||| ||  |||||   |||     
T  5452730 attgcc---tcatcgtataacatgtcagctattaactcctctggcctgccttcaatccacagtctccatgcctaaaatgacatcaaggttacagacagag 5452826  T
Q  219 taagctcaatcc 230  Q
    ||||||||||||    
T  5452827 taagctcaatcc 5452838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 5444234 - 5444413
Alignment:
Q  19 ctttagcataaaaaccgcagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacat 118  Q
    ||||| |||||||||| | ||||||||||||||||||||||| |||  |||||| ||||||| ||||||||| |||| |||||||||||||| ||||||     
T  5444234 ctttaacataaaaaccaccgatgacatgttaggcctattttccggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacac 5444333  T
Q  119 atggcctcatcatcgtataatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacat 201  Q
    || |||||||||   |||||||||| ||| || |||||   ||||||  |||| ||||| | | ||||||||| |||||||||    
T  5444334 attgcctcatca---tataatatgtcagccattaactcctctggcctgccttcaatccacaatttccatgcctaaaatgacat 5444413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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