View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14517_low_3 (Length: 690)
Name: NF14517_low_3
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14517_low_3 |
 | |
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| [»] scaffold0164 (2 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 340 - 675
Target Start/End: Complemental strand, 9799089 - 9798754
Alignment:
| Q |
340 |
atcatcatcaagaagatgatgaacttcatgatggtatcaaagctcttttgagcactgctgcgcatcgctttcttctcggttccttatcgttttcttcttc |
439 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9799089 |
atcatcatcaagaagatgatgaacttcatgatggtatcagagctcttttgagcactgctgcgcatcgctttcttctcggttccttatcgttttcttcttc |
9798990 |
T |
|
| Q |
440 |
ttcaccatggtgcctgctaacgctgtcgttaatggcggagcaaatgtggtgcctccgattcaagatccgtctcaacctggcaacgtctatttcgttcatg |
539 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9798989 |
ttcaccatggtgcatgctaacgctgtcgttaatggcggagcaaatgtggtgcctccgattcaagatccgtctcaacctggcaacgtctatttcgttcatg |
9798890 |
T |
|
| Q |
540 |
cttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagatcgatgcgaagagcacttggagccaggaa |
639 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9798889 |
cttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcttgggcgagatcgatgcgaagagcacttggagccaggaa |
9798790 |
T |
|
| Q |
640 |
taagtatgattttgttgacggtttaatccctgttcc |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
9798789 |
taagtatgattttgttgacggtttaatccctgttcc |
9798754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 87 - 287
Target Start/End: Complemental strand, 9799342 - 9799142
Alignment:
| Q |
87 |
tatactatctgttaaacttctggttacaccatagttaactagttgtgcaaattaacttgtgctctaagtttcctttaccaagtaccttacatagaatagc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9799342 |
tatactatctgttaaacttctggttacaccatagttaactagttgtgcaaattaacttgtgctctaagtttcctttaccaagtaccttacatagaatagc |
9799243 |
T |
|
| Q |
187 |
acagcttatagagtttgttagttacagatgttatacagttagatagcccctatataaacatatattgtaactaactcttatcattgaataacagaatata |
286 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9799242 |
acagcttatagagtttgttagttacagatgttatacagttagatagcccctatataaacatatattgtaactaactcttatcattgaataacagaatata |
9799143 |
T |
|
| Q |
287 |
c |
287 |
Q |
| |
|
| |
|
|
| T |
9799142 |
c |
9799142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 127 - 287
Target Start/End: Complemental strand, 9790287 - 9790124
Alignment:
| Q |
127 |
agttgtgcaaattaacttgtgctctaagtttcctttaccaagtaccttacatagaatagcacagcttatagagtttgttagttacagatgttatacagtt |
226 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| |||||| ||||| |||||||||||||||| |||||||||||||| |||||||| |||||||||||| |
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| T |
9790287 |
agttgtgcaagttaacttgtgctttaagtttcccttaccatgtaccctacatagaatagcacaacttatagagtttgtcagttacagctgttatacagtt |
9790188 |
T |
|
| Q |
227 |
ag---atagcccctatataaacatatattgtaactaactcttatcattgaataacagaatatac |
287 |
Q |
| |
|
|| ||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9790187 |
agatcatatcctctatataaacatatattgtaactaactcacatcattgaataacagaatatac |
9790124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 512 - 675
Target Start/End: Complemental strand, 49643100 - 49642937
Alignment:
| Q |
512 |
caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat |
611 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||| | || ||||| || | ||||||||||| | | ||||| ||||| ||||| |||||| | | |
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| T |
49643100 |
caacctggtaacgtgtattacgttcatgcttctgatggtccctcttcagtcgccattacaccggttcttagccattcaaattaccattcttgggcgcgtt |
49643001 |
T |
|
| Q |
612 |
cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttcc |
675 |
Q |
| |
|
| ||||||||||| |||||||| | ||| |||| ||||||||| || || | ||||||||||| |
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|
| T |
49643000 |
ctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttcc |
49642937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 675
Target Start/End: Complemental strand, 18792 - 18629
Alignment:
| Q |
512 |
caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat |
611 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||| | || |||||||| | ||||||||||| | | ||||| ||||| ||||| |||||| | | |
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| T |
18792 |
caacctggtaacgtgtattacgttcatgcttctgatggtccctcttccgtcgccattacaccggttcttagccattcaaattaccattcttgggcgcgtt |
18693 |
T |
|
| Q |
612 |
cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttcc |
675 |
Q |
| |
|
| ||||||||||| |||||||| | ||| |||| ||||||||| || || | ||||||||||| |
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|
| T |
18692 |
ctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttcc |
18629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 512 - 675
Target Start/End: Complemental strand, 29172 - 29009
Alignment:
| Q |
512 |
caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat |
611 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||| |||| | || |||||||| | ||||||||||| | | ||||| ||||| ||||| |||||| | | |
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| T |
29172 |
caacctggtaacgtgtattacgttcatgcttgtgatggtccctcttccgtcgccattacaccggttcttagccattcaaattaccattcttgggcgcgtt |
29073 |
T |
|
| Q |
612 |
cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttcc |
675 |
Q |
| |
|
| ||||||||||| |||||||| | ||| |||| ||||||||| || || | ||||||||||| |
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|
| T |
29072 |
ctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttcc |
29009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 675
Target Start/End: Original strand, 15191182 - 15191345
Alignment:
| Q |
512 |
caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat |
611 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||| | || |||||||| | ||||||||||| | | ||||| ||||| ||||| |||||| | | |
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|
| T |
15191182 |
caacctggtaacgtgtattacgttcatgcttctgatggtccctcttccgtcgccattacaccggttcttagccattcaaattaccattcttgggcgcgtt |
15191281 |
T |
|
| Q |
612 |
cgatgcgaagagcacttggagccaggaataagtatgattttgttgacggtttaatccctgttcc |
675 |
Q |
| |
|
| ||||||||||| |||||||| | ||| |||| ||||||||| || || | ||||||||||| |
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|
| T |
15191282 |
ctatgcgaagagctcttggagcgaagaacaagtttgattttgtggatggatctatccctgttcc |
15191345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 512 - 624
Target Start/End: Complemental strand, 29155739 - 29155627
Alignment:
| Q |
512 |
caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat |
611 |
Q |
| |
|
|||||| | ||| |||||| |||||||||||| ||| | ||||| ||||| | ||||| ||||| |||||| | |||| |||||||||||||||| | | |
|
|
| T |
29155739 |
caaccttggaacatctattacgttcatgcttccgatggtccttcctccgtcaccattactccggtattgaataactccagttatcattcatgggcgcgtt |
29155640 |
T |
|
| Q |
612 |
cgatgcgaagagc |
624 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
29155639 |
caatgcgaagagc |
29155627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 26129191 - 26129227
Alignment:
| Q |
370 |
atggtatcaaagctcttttgagcactgctgcgcatcg |
406 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
26129191 |
atggtatcagagctcttttgagctctgctgcgcatcg |
26129227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 512 - 654
Target Start/End: Original strand, 18252030 - 18252172
Alignment:
| Q |
512 |
caacctggcaacgtctatttcgttcatgcttctgatcgaccttcttccgtttctattacaccggtgttgaatcattccaattatcattcatgggcgagat |
611 |
Q |
| |
|
|||||||| || || |||| |||||||| ||||||| | || |||||||| | ||||||||||| | | |||||| |||| ||||| |||||| | | |
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|
| T |
18252030 |
caacctggtaatgtgtattacgttcatgattctgatggtccctcttccgtcgccattacaccggttcttagtcattcaaatttccattcttgggcgcgtt |
18252129 |
T |
|
| Q |
612 |
cgatgcgaagagcacttggagccaggaataagtatgattttgt |
654 |
Q |
| |
|
| ||||||||||| ||||||| | ||| |||| ||||||||| |
|
|
| T |
18252130 |
ctatgcgaagagctcttggagggaagaacaagtttgattttgt |
18252172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 20246277 - 20246231
Alignment:
| Q |
355 |
atgatgaacttcatgatggtatcaaagctcttttgagcactgctgcg |
401 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
20246277 |
atgacgaacttcatgatggtatcaaatctcttttgagctctgatgcg |
20246231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 13985941 - 13985977
Alignment:
| Q |
370 |
atggtatcaaagctcttttgagcactgctgcgcatcg |
406 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
13985941 |
atggtatcagagctcttttgagctctgctgcgcatcg |
13985977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 97976 - 97940
Alignment:
| Q |
370 |
atggtatcaaagctcttttgagcactgctgcgcatcg |
406 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
97976 |
atggtatcagagctcttttgagctctgctgcgcatcg |
97940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 16254471 - 16254507
Alignment:
| Q |
370 |
atggtatcaaagctcttttgagcactgctgcgcatcg |
406 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
16254471 |
atggtatcagagctcttttgagctctgctgcgcatcg |
16254507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 31197332 - 31197296
Alignment:
| Q |
370 |
atggtatcaaagctcttttgagcactgctgcgcatcg |
406 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
31197332 |
atggtatcagagctcttttgagctctgctgcgcatcg |
31197296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 370 - 406
Target Start/End: Original strand, 52770984 - 52771020
Alignment:
| Q |
370 |
atggtatcaaagctcttttgagcactgctgcgcatcg |
406 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
52770984 |
atggtatcagagctcttttgagctctgctgcgcatcg |
52771020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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