View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14517_low_4 (Length: 475)
Name: NF14517_low_4
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14517_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 40173338 - 40172886
Alignment:
| Q |
1 |
tatggaagtgttctctcttcactttattgtagatccaaacaaataaattgcattaaaataattttttgttgaaatgtaataatttagagttttgaggaga |
100 |
Q |
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| T |
40173338 |
tatggaagtgttctctcttcactttattgtagattcaaacaaataaattgcattaaaataattttttgttgaaatgtaataatttagagttttgaggaga |
40173239 |
T |
|
| Q |
101 |
ccaatttagtnnnnnnnnnn----tgttgtgttgaaaatatttgannnnnnnggtatataaagaggacaaagccgaaagaaaaaaccaaagaaatatctt |
196 |
Q |
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| T |
40173238 |
tcaatttagtaaaaaaaaaaaatatgttgtgttgaaaatatttgatttttttggtatataaagaggacaaagccgaaa-aaaaaaccaaagaaatatctt |
40173140 |
T |
|
| Q |
197 |
ttgttgaaatgtaaatgagatgttgagttcaacacgcatactannnnnnnnnnnnnnnaggagcaagcaggaagttctaagttgttactcaactcaagcc |
296 |
Q |
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| T |
40173139 |
ttgttgaaatgtaaatgagatgttgagttcaacacgcatactattttttttt------aggagcaagcaggaagttctaaggtgttactcaactcaagcc |
40173046 |
T |
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| Q |
297 |
attccttttaatggtttgggcgtttttccttacattttgaagaagaaatagtatgcgtgttgaactcgttttattgaggaacagaggaaaatataggtcg |
396 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40173045 |
attccttctaatggtttgggcgtttttccttacattttgaagaagaaatagtatacgtgttgaactcgttttattgaggaacagagaaaaatataggtcg |
40172946 |
T |
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| Q |
397 |
tatcatgaatttgttgtgattgtttaaattttcaagaccttgaagtcttaaccttgacat |
456 |
Q |
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| T |
40172945 |
tatcatgaatttgttgtgattgtttaaattttcaagaccttgaagtcttaaccttgacat |
40172886 |
T |
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