View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14517_low_5 (Length: 466)
Name: NF14517_low_5
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14517_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Complemental strand, 10065808 - 10065374
Alignment:
| Q |
19 |
gatgataggtgccaattttcggcaacatggataaacagttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgt |
118 |
Q |
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| T |
10065808 |
gatgataggtgccaattttcagcaacatggataaacagttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgt |
10065709 |
T |
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| Q |
119 |
tcgtgaaggtgatccagtggacgaaatgctcttcatcatgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactcgacc |
218 |
Q |
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| T |
10065708 |
tcgtgaaggtgatccagtggacgaaatgctcttcatcatgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactcgacc |
10065609 |
T |
|
| Q |
219 |
gaactcaaggctggtgatttttgtggagaggagcttctaacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaa |
318 |
Q |
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| T |
10065608 |
gaactcaaggctggtgatttttgtggagaggagcttctaacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaa |
10065509 |
T |
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| Q |
319 |
ctattacggaagttgaagcttttgctctaatgcatgatgacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacac |
418 |
Q |
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| T |
10065508 |
ctattacggaagttgaagcttttgctctaatgcatgatgacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacac |
10065409 |
T |
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| Q |
419 |
tttcaggcaaggcttgatatgttttttcacctttg |
453 |
Q |
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| T |
10065408 |
tttcaggcaaggcttgatatgttttttcacctttg |
10065374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 57 - 438
Target Start/End: Original strand, 48466125 - 48466506
Alignment:
| Q |
57 |
ttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgttcgtgaaggtgatccagtggacgaaatgctcttcatca |
156 |
Q |
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|||||||||||||||||||||| ||||||||| || || ||||| ||||| || | | ||||||| |||| |||||||| || || ||||| ||||| | |
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| T |
48466125 |
ttgttggatgcaatgtgtgatagactgaagccagttctgtatacagagaagagctgcattgttcgcgaagaagatccagttgatgagatgcttttcatta |
48466224 |
T |
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| Q |
157 |
tgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactcgaccgaactcaaggctggtgatttttgtggagaggagcttct |
256 |
Q |
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|||| |||||| | || || |||||||||||||||||||||||||| ||||| || | | |||||||||||||||||||||| ||| | |
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| T |
48466225 |
tgcgaggaaaagtcgctaccatgacaacaaatggtggaagaactggtttcttcaactcattatttctaatgcctggtgatttttgtggagaggaactttt |
48466324 |
T |
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| Q |
257 |
aacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaactattacggaagttgaagcttttgctctaatgcatgat |
356 |
Q |
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| T |
48466325 |
aacatgggctttggatccaaactcctcctcgaatctacctacttcaactagaacagtagaaactatatcagaagttgaagcatttgcactcaaggctgat |
48466424 |
T |
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| Q |
357 |
gacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacactttcaggcaaggcttgatat |
438 |
Q |
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| T |
48466425 |
gacttgaagtttgttgcttcccaatttagacgtcttatcaacagcaaacaactccaacacactttcaggtatggcttgatat |
48466506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 275
Target Start/End: Original strand, 41395665 - 41395825
Alignment:
| Q |
115 |
ttgttcgtgaaggtgatccagtggacgaaatgctcttcatcatgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactc |
214 |
Q |
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||||||| ||||| ||||| || || || ||||||||||| |||||||||||| | ||| | || ||||| ||||||||||| |||||||| ||||| |
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| T |
41395665 |
ttgttcgcgaaggagatcctgttgatgagatgctcttcataatgcgcggaaaattgttgaccgtgacaacaaacggtggaagaacaggtttcttcaactc |
41395764 |
T |
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| Q |
215 |
gaccgaactcaaggctggtgatttttgtggagaggagcttctaacatgggccttggatcct |
275 |
Q |
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| T |
41395765 |
tgaatacctcaaggctggtgacttctgtggagaggagcttctcacatgggcattagatcct |
41395825 |
T |
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