View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14517_low_7 (Length: 445)
Name: NF14517_low_7
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14517_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 33387921 - 33388361
Alignment:
| Q |
1 |
gtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgtt |
100 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387921 |
gtcgaacattatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgtt |
33388020 |
T |
|
| Q |
101 |
caatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388021 |
caatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtacc |
33388120 |
T |
|
| Q |
201 |
gataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactca |
300 |
Q |
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| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388121 |
gctaccatcgcagaaattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactca |
33388220 |
T |
|
| Q |
301 |
taatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacactt-----------attaaggtttcaggagcaggagggtc |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33388221 |
taatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacacttccaaagcacgcattaaggtttcaggagcaggagggtc |
33388320 |
T |
|
| Q |
390 |
catgaagtcaaaatgaactaaatcatctatacccaatttct |
430 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388321 |
catgaagtcaaaatgaactaaatcatctatacccaatttct |
33388361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 20817183 - 20816743
Alignment:
| Q |
1 |
gtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctcattgttttgcttgtaggcatggtatacgtt |
100 |
Q |
| |
|
|||||| | ||||||||||||||| | |||| | ||||| |||||| || ||||||||||| | |||||| |||||||||||||||||||| ||||| || |
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|
| T |
20817183 |
gtcgaacattatcagctgatttcaacaccctataattaataaagttgtcgtagcaccaagaagcatcctcgttgttttgcttgtaggcatgatatacatt |
20817084 |
T |
|
| Q |
101 |
caatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatccctaggccgaataaagcaattgggtacc |
200 |
Q |
| |
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||| |||||||||||||||||||||| |||| |||||||||||| |||||||| |||||| |||||| ||| ||||||| ||||||||||||||||| |
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| T |
20817083 |
caagagtgtgagatgatctccatcaacgtgtataaacctagctttcgcttcatccgcagctatttgtgcctccttaggccggataaagcaattgggtact |
20816984 |
T |
|
| Q |
201 |
gataccatcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactca |
300 |
Q |
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|| | ||||||||| ||||| |||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20816983 |
gacagcatcgcagaaattgacagaatctcatttgaacagttgaactcagggctaacaacaagcatctttgacatctgagggtccaacggaaactcactca |
20816884 |
T |
|
| Q |
301 |
taatctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacactt-----------attaaggtttcaggagcaggagggtc |
389 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
20816883 |
taatcttacccaactttgttaagttaccttcatcatccattgcacccaagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtc |
20816784 |
T |
|
| Q |
390 |
catgaagtcaaaatgaactaaatcatctatacccaatttct |
430 |
Q |
| |
|
||| ||||||||||| |||||||| |||||||||||||||| |
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|
| T |
20816783 |
cataaagtcaaaatgtactaaatcgtctatacccaatttct |
20816743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 206 - 430
Target Start/End: Original strand, 38779167 - 38779402
Alignment:
| Q |
206 |
catcgcagatattgaaagaatctcgtttgaacagttgaactctggactaacaataagcatctttgacatctgagggtccaatggaaactcactcataatc |
305 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779167 |
catcgcagaaattgaaagaatctcattcgaacagttgaactcaggactaacaacaagcatctttgacatctgagggtccaatggaaactcactcataatc |
38779266 |
T |
|
| Q |
306 |
tcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacactt-----------attaaggtttcaggagcaggagggtccatga |
394 |
Q |
| |
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||||| |||||||||||||||||||||||||| | |||||| |||||||||||||||| || ||||||||||| |||||||||||||||| |
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| T |
38779267 |
tcaccaagctttgttaagttaccttcatcatccagtgcacccaagtaattcaacacttccaaagcacgcatcaaggtttcaggggcaggagggtccatga |
38779366 |
T |
|
| Q |
395 |
agtcaaaatgaactaaatcatctatacccaatttct |
430 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
38779367 |
agtcaaaatgaactaaatcatctatacccagtttct |
38779402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 73 - 199
Target Start/End: Original strand, 38778622 - 38778748
Alignment:
| Q |
73 |
tgttttgcttgtaggcatggtatacgttcaatagtgtgagatgatctccatcaatgtgtgcaaacctagcttttgcttcatctgcagcttcttgtgcatc |
172 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||| || |
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| T |
38778622 |
tgttttgcttgtaggcatggtatacattcaagagtgtgagatgatctccatcaatgtgtccaaacctagctttggcttcatccgcagctttttgtgcctc |
38778721 |
T |
|
| Q |
173 |
cctaggccgaataaagcaattgggtac |
199 |
Q |
| |
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||||||||| ||||||||||||||||| |
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|
| T |
38778722 |
cctaggccggataaagcaattgggtac |
38778748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38778444 - 38778513
Alignment:
| Q |
1 |
gtcgaagaatatcagctgatttcagcgccctgtgattaacaaagttttcatagcaccaagatggatcctc |
70 |
Q |
| |
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|||||| | ||||||||||||| |||||||| | |||||| ||||| || ||||||||||| | |||||| |
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| T |
38778444 |
gtcgaacattatcagctgatttaagcgccctattattaacgaagttgtcgtagcaccaagaagcatcctc |
38778513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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