View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14517_low_8 (Length: 384)
Name: NF14517_low_8
Description: NF14517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14517_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 9707339 - 9706982
Alignment:
| Q |
18 |
gatcatggattcacaactcaagggtcagtttccgcctaaagcagcaagaaaagtagctggaattgtacaacgatgccttcaaatggagccatcagaaaga |
117 |
Q |
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| T |
9707339 |
gatcatggattcacaactgaaaggtcagtttccgcctaaagcagcaagaaaagtagctggaattgtacaacgatgccttcaaatggagccatcagaaaga |
9707240 |
T |
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| Q |
118 |
ccaaccatgagagccattgtcgagagtctgaaaatcatagtagatacggagtaccctagttggatcccactgaaagagccagcagccatgtatggaagac |
217 |
Q |
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| T |
9707239 |
ccaaccatgagagccattgttgagagtctcaaaatcatagtagatacggagtaccctagttggatcccactgcaagagccagcagccatgtatggaagac |
9707140 |
T |
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| Q |
218 |
atgcgtcgagatcaccaagtgttgatggtatcattaatgcacctagactgagtttctcaactccattactaccatcaaaagccagaacatctgtttcaca |
317 |
Q |
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| T |
9707139 |
atgcgtcgagatcaccaagtgttgatggtatcattaatgcacctagactgagtttctcaactccattactaccatcaaaagccagaacatctgtttcaca |
9707040 |
T |
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| Q |
318 |
tcctgcaagatggtcaactgtgtcgccagtgcttccttctcctcttgctcattcctcc |
375 |
Q |
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| T |
9707039 |
tcctgcaagatggtcaactgtgtcgacagtgcttccttctcctcttgctcgttcctcc |
9706982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 5792659 - 5792612
Alignment:
| Q |
79 |
attgtacaacgatgccttcaaatggagccatcagaaagaccaaccatg |
126 |
Q |
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| T |
5792659 |
attgcacaaagatgccttcaaatggagccatcagaacgaccaaccatg |
5792612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 27346067 - 27346143
Alignment:
| Q |
53 |
ctaaagcagcaagaaaagtagctggaattgtacaacgatgccttcaaatggagccatcagaaagaccaaccatgaga |
129 |
Q |
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| T |
27346067 |
ctaaagcagcaagaacaatagccgacattgcacaaagatgccttcaaaaggagccatcagatagacccaccatgaga |
27346143 |
T |
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