View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14518_high_3 (Length: 329)
Name: NF14518_high_3
Description: NF14518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14518_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 45666858 - 45667047
Alignment:
| Q |
2 |
ctttcccttttttgctgtaaaaaagttatagagatactaaagagaaaatactccgtcggggaggtggatggtgtaacaatgccagatcatgtgtttatcg |
101 |
Q |
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| T |
45666858 |
ctttcccttttttgctgtaaaaaagttatagtgatactaaagagaaaatactctgtcagggaggtggatggtgtaacaatgtcagatcatgtgtttatcg |
45666957 |
T |
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| Q |
102 |
caagaaaacacggcatggatcatcattatacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
191 |
Q |
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| T |
45666958 |
caagaaaacacggcgtggatcatcattatacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
45667047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 45667097 - 45667185
Alignment:
| Q |
241 |
gttgtaggcattagtctctctgatcatgttattgttgctcgtgttcgcagattttttcaactggaatagagtaaagcttcgttattgtg |
329 |
Q |
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| T |
45667097 |
gttgtaggcattagtctctctgatcatgttattgttgctcgtgttcgcagattttttcaactggaatagagcaaagcttcgttattgtg |
45667185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 38257767 - 38257829
Alignment:
| Q |
129 |
atacatggaaaaggagataccattcacaggaatacttagtaataaacctgaagaaaatccagg |
191 |
Q |
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| T |
38257767 |
atacatggaaaatcaaataccattcacaggaatattgagcaataaacctgaagaaaacccagg |
38257829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 51344537 - 51344495
Alignment:
| Q |
287 |
gcagattttttcaactggaatagagtaaagcttcgttattgtg |
329 |
Q |
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| T |
51344537 |
gcagattttttcaattggaatagagtaaaaattcgttattgtg |
51344495 |
T |
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