View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14518_high_4 (Length: 319)
Name: NF14518_high_4
Description: NF14518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14518_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 117 - 305
Target Start/End: Original strand, 56229430 - 56229618
Alignment:
| Q |
117 |
ataggaaacttgaaagttaatccttgcattgtaaattgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatgg |
216 |
Q |
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| T |
56229430 |
ataggaaacttgaaagttaatccttgcattgtaaattgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatgg |
56229529 |
T |
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| Q |
217 |
ctttgctgctttcctggaagagaaagaagctgctgacattgcaggtaaccttcaaaataactgatgatatgaatggaagaatattaatg |
305 |
Q |
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| T |
56229530 |
ctttgctgctttcctggaagagaaagaagctgctgacattgcaggtaaccttcaaaataactgatgatatgaatggaagaatatcaatg |
56229618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 56229324 - 56229357
Alignment:
| Q |
11 |
agaatatgatgggataaaatttcaacggaacatc |
44 |
Q |
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| T |
56229324 |
agaaaatgatgggataaaatttcaacggaacatc |
56229357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 39186126 - 39186250
Alignment:
| Q |
151 |
attgtaatgcagtcatgagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatggctttgctgctttcctggaagagaaagaagctgct |
250 |
Q |
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| T |
39186126 |
attgtaattcagccatgagaaagcaaaagaggcaatgatatattcatacacaaagaatatcaatggatttgctgctctcttggaagagaaagaagctgct |
39186225 |
T |
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| Q |
251 |
gacattgcaggtaaccttcaaaata |
275 |
Q |
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| T |
39186226 |
gatattgcaggtaaccttcaaaata |
39186250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 31197124 - 31197216
Alignment:
| Q |
167 |
gagaaagcaaaagaagcaatgatatattcatacacaaagaatatcaatggctttgctgctttcctggaagagaaagaagctgctgacattgca |
259 |
Q |
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| T |
31197124 |
gagaaagcaaaagaagcaatcatttattcatataacaaacacatcaatggctttgctgctctacttgaagatgaagaagctgcagatattgca |
31197216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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