View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14518_high_7 (Length: 269)
Name: NF14518_high_7
Description: NF14518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14518_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 32855935 - 32855684
Alignment:
| Q |
1 |
aagcgtggaagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacaggtagcacttgatattttc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32855935 |
aagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacaggtagcacttgatattttc |
32855836 |
T |
|
| Q |
101 |
agctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttaattgatgtgagcttttaaactttataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32855835 |
agctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttgattgatgtgagcttttaaactttataa |
32855736 |
T |
|
| Q |
201 |
tacagtctcaaagcaaatcacaattcaacaccagacacgccccggattccac |
252 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32855735 |
tacagtctcaaaacaaatcacaattcaacaccagacacgccccggattccac |
32855684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 48 - 233
Target Start/End: Complemental strand, 32850489 - 32850285
Alignment:
| Q |
48 |
ttgttgcatttagtaacctttggccaccccaacaggtagcacttgatattttcagctggaaaggacctga--------------gtatcagaatgactaa |
133 |
Q |
| |
|
|||||||| |||||||| ||| || |||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
32850489 |
ttgttgcacttagtaacttttagcaaccccaacaggtagcagttggtattttcagctggaaaggacctgataatccctaaagttgtatcagcatgactaa |
32850390 |
T |
|
| Q |
134 |
tgatgatttgagcatgtagag--------cagggtaactcttctcttaattgatgtgagcttttaaactttataatacagtctcaaagcaaatcacaatt |
225 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32850389 |
tgat---ttgagcatgtagaggcgtagagcagggtaactcttctctcaattgatgtgagcttttaaactttataatacagtctcaaaacaaatcacaatt |
32850293 |
T |
|
| Q |
226 |
caacacca |
233 |
Q |
| |
|
|||||||| |
|
|
| T |
32850292 |
caacacca |
32850285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University