View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14518_low_1 (Length: 1190)
Name: NF14518_low_1
Description: NF14518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14518_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 963; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 963; E-Value: 0
Query Start/End: Original strand, 19 - 1172
Target Start/End: Complemental strand, 7369233 - 7368077
Alignment:
| Q |
19 |
atatttttcgctgatcctggatttacagcaattggtgcttgcattagggacgaagacagtggtcaatggataatttcttttgtgaaataaagacttaggt |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7369233 |
atatttttcgctgatcttggatttacagcaattggtgcttgcattagggacgaagacagtggtcaatggataatttcttttgtgaaataaagacttaggt |
7369134 |
T |
|
| Q |
119 |
taggatgagcattaatatatacaaagttctaatttctcatatgtactacgttnnnnnnntgttataattcaaacgctaagcagcttgttat---acatga |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
7369133 |
taggatgagcattaatatatacaaagttctaatttctcatatgtactacgttaaaaaaatgttataattcaaacgctaagcagcttgttattatacatga |
7369034 |
T |
|
| Q |
216 |
atttaactaatgtatatatcatcctaaaaggtaaaagtgcatggtgaagtgtttacatatttcagtgtcaattatgagctcagttgcagcacccattgta |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7369033 |
atttaactaatgtatatatcatcctaaaaggtaaaagtgcatggtgaagtgtttacat--ttcagtgtcaattatgagctcagttgcagcacccattgta |
7368936 |
T |
|
| Q |
316 |
ccaccccaccaacatccacaaagcaagagcaagctcctcctcgttcctctctttgattttttatgctcaatttataggcttcaattccctcaattgataa |
415 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7368935 |
ccaccccaccaacatctacaaagcaagagcaagctcctcctcgttcctctctttgattttttgtgctcaatttataggcttcaattccctcaattgataa |
7368836 |
T |
|
| Q |
416 |
acatttgtcaatgggataaatctgagaaatatggagtaaatagatacaagtgcatttagtaaatgtgtctacaaagaaaatacaatagttgtagaaactt |
515 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
7368835 |
acatttgtcaatgggaaaaatctgagaaatatggagtaaatagatacaagtgcatttagtaaatgtgtctacaaagaaaatataatagttttagaaactt |
7368736 |
T |
|
| Q |
516 |
gaagagggcaggggtgaaggaccccataaatcagcatgaataacttcaaaaggattagaatgggtttacctaggcaacaaaaattacacaaaacgggcaa |
615 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7368735 |
gaagagggcaggggtgaaggaccccataaatcagcatgaataacttcaaaaggattagaatgggtttacctaggcaacaaacattacacaaaacgggcaa |
7368636 |
T |
|
| Q |
616 |
atttttattgatgaaacatattgtattttataacggctgcattactaatttaataacatttatatgagaacggccaagtctacaacaacaacaataaagt |
715 |
Q |
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| T |
7368635 |
attttt-ttgatgaaacatactgtattttataacggctgcattactaatttaataacatttatatgagaaaggccaagtctacaacaacaacaataaagt |
7368537 |
T |
|
| Q |
716 |
cttatctcattaagtgggatc----atgtggatcaaactacgccataatatttatggtaaataatatttcaaatcagttcattaatctctagatgataag |
811 |
Q |
| |
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|||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7368536 |
cttatctcattaggtgggatcaactatgtgaatcaaactacgtcataatatttatggtaaataatatttcgaatcagttcattaatctctagatgataag |
7368437 |
T |
|
| Q |
812 |
actaccaagtctattgtgccaattttgaattggtaaaagaaggaacacagcnnnnnnnnnnnnnnnnntttactaatggaagtaacctggaataagagaa |
911 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7368436 |
actaccaagtctattgtgccaattttgaattggtaaaagaaggaacacag-aaaaaataaacaaaaaatttactaatggaagtaacctggaataagagaa |
7368338 |
T |
|
| Q |
912 |
acgaaatgtacattttggtatgaaacttagcttcattacttagtaagagttacactttctctattaaaaaatacacatcatcaatgagatatcgaactta |
1011 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7368337 |
acgaaatgtgcattttggtatgaaacttagcttcattacttagtaagagttacactttctctattaaaaaatacacatcatcaatgagatatcgaactta |
7368238 |
T |
|
| Q |
1012 |
tatgataaggaatatgtttgaaacttggaaggatcgcattaaaattgttagtttagttggtttgttattcttaacgaacagcctataactaacttattga |
1111 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
7368237 |
tatgacaaggaatatgtttgaaacttggaaggatcgcattaaaattgttagtttagttggtttgttattcttaacgagcaacctataactaacttattga |
7368138 |
T |
|
| Q |
1112 |
gagtgattatatactctaatacattagaaacaaagaaaataggaagaaacttctatgtgtg |
1172 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7368137 |
gagtgattatatactctaatacattagaaacaaagaaaataggaagaaacttctatgtgtg |
7368077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 204 - 354
Target Start/End: Complemental strand, 7290200 - 7290050
Alignment:
| Q |
204 |
tgttatacatgaa-tttaactaatgtatatatcatcctaaaaggtaaaagtgcatggtgaagtgtttacatatttcagtgtcaattatgagctcagttgc |
302 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |||| |||||| |||||| |||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
7290200 |
tgttatacatgaaatttaactaatgtacatatcatcc-aaaatgtaaaactgcatgttgaagtgtttacat--ttcagtgtcaattatgagctcagctgc |
7290104 |
T |
|
| Q |
303 |
agcacccattgtacc-accccaccaacatcc-acaaagcaagagcaagctcctc |
354 |
Q |
| |
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||||||||||||||| |||||||||||| || |||||||||||||||||||||| |
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| T |
7290103 |
agcacccattgtaccaaccccaccaacacccaacaaagcaagagcaagctcctc |
7290050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1052 - 1161
Target Start/End: Complemental strand, 7377196 - 7377088
Alignment:
| Q |
1052 |
aaaattgttagtttagttggtttgttattcttaacgaacagcctataactaacttattgagagtgattatatactctaatacattagaaacaaagaaaat |
1151 |
Q |
| |
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||||||| |||||||||| |||||||||||||||| ||| || ||| ||| ||||||||| |||| |||||||||||| |||| ||||| ||||||| |
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| T |
7377196 |
aaaattgctagtttagttagtttgttattcttaacaaactaactgtaattaatttattgagactgatcctatactctaata-attaaaaacagagaaaat |
7377098 |
T |
|
| Q |
1152 |
aggaagaaac |
1161 |
Q |
| |
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|||||||||| |
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| T |
7377097 |
aggaagaaac |
7377088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 453 - 507
Target Start/End: Complemental strand, 7377529 - 7377476
Alignment:
| Q |
453 |
aaatagatacaagtgcatttagtaaatgtgtctacaaagaaaatacaatagttgt |
507 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| | |||||||||||||||||||| |
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| T |
7377529 |
aaatagatacaagtg-atttagaaaatgtgtcaagaaagaaaatacaatagttgt |
7377476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 697 - 760
Target Start/End: Original strand, 37430417 - 37430484
Alignment:
| Q |
697 |
acaacaacaacaataaagtcttatctcattaagtgggatc----atgtggatcaaactacgccataat |
760 |
Q |
| |
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||||||||||||| ||| ||||||||| ||||||||||| || ||||||||||||||||||||| |
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| T |
37430417 |
acaacaacaacaaccaagccttatctcactaagtgggatcggctatatggatcaaactacgccataat |
37430484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 701 - 763
Target Start/End: Complemental strand, 26490596 - 26490530
Alignment:
| Q |
701 |
caacaacaataaagtcttatctcattaagtgggatc----atgtggatcaaactacgccataatatt |
763 |
Q |
| |
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|||||||||| ||||||||||| | ||||||||||| || ||||||||| |||||||||||||| |
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|
| T |
26490596 |
caacaacaatcaagtcttatcttactaagtgggatcgactatatggatcaaattacgccataatatt |
26490530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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