View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14518_low_11 (Length: 290)
Name: NF14518_low_11
Description: NF14518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14518_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 131 - 274
Target Start/End: Complemental strand, 43188473 - 43188330
Alignment:
| Q |
131 |
gtaaagagaaaatgataaatagaatgaattgagttcattgattgtatatgatgaagtaggcaaaacaactttacttgaagcttctcgcgaatgatgtgac |
230 |
Q |
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| T |
43188473 |
gtaaagagaaaatgataaatagaatgaattgagttcattgattgtatatgatgaagtaggcaaaacaactttacttgaagcttctcgcgaatgatgtgac |
43188374 |
T |
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| Q |
231 |
aattgacaccaatatgttttgtgtgttcatgtacgcaaaggttg |
274 |
Q |
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| T |
43188373 |
aattgacaccaatatgttttgtgcgttcatgtacgcaaaggttg |
43188330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 43188616 - 43188512
Alignment:
| Q |
17 |
tgaacaacaggaagaacagatggaccacaaactataaaatcctcctaaagtgggaaaattgtacgtggatcactttggtacattgtttactatggattac |
116 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
43188616 |
tgaacaacaggaagaatagatgaaccacaaactataaaatcctcctaaagtgggaaaattgtacgcggattactttggtacattgtttactatggattac |
43188517 |
T |
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| Q |
117 |
tcgct |
121 |
Q |
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||||| |
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| T |
43188516 |
tcgct |
43188512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 43182382 - 43182335
Alignment:
| Q |
135 |
agagaaaatgataaatagaatgaattgagttcattgattgtatatgat |
182 |
Q |
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| T |
43182382 |
agagaaaatgatgaatagaatgaattgagttcattgattgtaaatgat |
43182335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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