View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14518_low_16 (Length: 201)
Name: NF14518_low_16
Description: NF14518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14518_low_16 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 18509089 - 18508889
Alignment:
| Q |
1 |
caaaccacaagataatcttcatctttggagagtgcaacaccattggcaaaggccaaatgatcaaggacaataacggtttcatttgacaatggattgtacc |
100 |
Q |
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| T |
18509089 |
caaaccacaagataatcttcatctttggagagtgcaacaccattggcaaaggccaaatgatcaaggacaataacggtttcatttgacaatggattgtacc |
18508990 |
T |
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| Q |
101 |
ttaaaagttgtccatgaggtcttgcctcaagcacatctagataccaattgtgtaaatcaaatttggtacttggaacactgaaataaatatttccatctga |
200 |
Q |
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| T |
18508989 |
ttaaaagttgtccatgtggtcttgcctcaagcacatctagataccaattgtgtaaaccaaatttggtacttggtacactgaaatatatatttccatctga |
18508890 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
18508889 |
t |
18508889 |
T |
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Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 18490580 - 18490388
Alignment:
| Q |
9 |
aagataatcttcatctttggagagtgcaacaccattggcaaaggccaaatgatcaaggacaataacggtttcatttgacaatggattgtaccttaaaagt |
108 |
Q |
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| T |
18490580 |
aagataatcttcatctttggagagtgcaacaccattggcaaaggccaaatgatcaaggacaataacggtttcatttgacaatggattgtaccttaaaagt |
18490481 |
T |
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| Q |
109 |
tgtccatgaggtcttgcctcaagcacatctagataccaattgtgtaaatcaaatttggtacttggaacactgaaataaatatttccatctgat |
201 |
Q |
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| T |
18490480 |
tgtccatgtgatcttgcctcaagcacatccaaataccaattgtgcataccaaatttggtacttggaacactgaaataaatatttccatctgat |
18490388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 201
Target Start/End: Complemental strand, 18515237 - 18515040
Alignment:
| Q |
4 |
accacaagataatcttcatctttggagagtgcaacaccattggcaaaggccaaatgatcaaggacaataacggtttcatttgacaatggattgtacctta |
103 |
Q |
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||||||| |||||||||||| ||||| |||||||||||||| ||||| | ||||| ||||| ||||||||| || |||||| || ||||| ||| ||| |
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| T |
18515237 |
accacaacataatcttcatccttggacagtgcaacaccatttgcaaatgtcaaattatcaatgacaataactgtctcatttaacgtgggattatacttta |
18515138 |
T |
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| Q |
104 |
aaagttgtccatgaggtcttgcctcaagcacatctagataccaattgtgtaaatcaaatttggtacttggaacactgaaataaatatttccatctgat |
201 |
Q |
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| T |
18515137 |
aaagttgtccatgaggtcttgcctctagcaaatccaaataccaatcgtgtaaaccaaatttgttactaccaacactgaagtatatatttccatctgat |
18515040 |
T |
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