View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14518_low_4 (Length: 392)

Name: NF14518_low_4
Description: NF14518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14518_low_4
NF14518_low_4
[»] chr1 (3 HSPs)
chr1 (19-322)||(6895146-6895444)
chr1 (351-386)||(6895116-6895151)
chr1 (341-381)||(17486260-17486300)
[»] chr8 (3 HSPs)
chr8 (341-383)||(26915248-26915290)
chr8 (341-378)||(32691757-32691794)
chr8 (341-381)||(10002171-10002211)
[»] chr4 (1 HSPs)
chr4 (341-383)||(44362675-44362717)
[»] chr2 (2 HSPs)
chr2 (341-383)||(13501086-13501128)
chr2 (341-390)||(43586013-43586062)
[»] chr7 (2 HSPs)
chr7 (341-378)||(10893877-10893914)
chr7 (342-382)||(2143862-2143902)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 6895444 - 6895146
Alignment:
Q  19 gaagggctgataatttagctttttgccttttccaaccgaatgccggtcgggttgatgcaaatactaagctcaattacatgaatatgtttgatgctcaggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6895444 gaagggctgataatttagctttttgccttttccaaccgaatgccggtcgggttgatgcaaatactaagctcaattacatgaatatgtttgatgctcaggt 6895345  T
Q  119 tagtccaaacatcaattctgattaattccttgtttatataannnnnnnnnnnnnnnnnnngcagaagctaaattccttgtttatatagttttataatgat 218  Q
    ||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||    
T  6895344 tagtccaaacatcaattctgattaattccttgtttatata-----gttttttttttttttgcagaagctaaattccttgtttatatagttttataatgat 6895250  T
Q  219 aatttattatttagtttactttgtattcgtaaaagattaaactagacaacaagtatgtagcatcgacacttgtgatggaaggtgtgtccaagtgtccgtt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6895249 aatttattatttagtttactttgtattcgtaaaagattaaactagacaactagtatgtagcatcgacacttgtgatggaaggtgtgtccaagtgtccgtt 6895150  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 386
Target Start/End: Complemental strand, 6895151 - 6895116
Alignment:
Q  351 ttacattacattatgtcattttcttaaaattttgtc 386  Q
    ||||||||||||||||||||||||||||||||||||    
T  6895151 ttacattacattatgtcattttcttaaaattttgtc 6895116  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 17486260 - 17486300
Alignment:
Q  341 acacatgtgattacattacattatgtcattttcttaaaatt 381  Q
    ||||||||||||||| |||||||||||||||| | ||||||    
T  17486260 acacatgtgattacactacattatgtcattttatcaaaatt 17486300  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 26915248 - 26915290
Alignment:
Q  341 acacatgtgattacattacattatgtcattttcttaaaatttt 383  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||    
T  26915248 acacttgtgattacattaaattatgtcattttctcaaaatttt 26915290  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 32691794 - 32691757
Alignment:
Q  341 acacatgtgattacattacattatgtcattttcttaaa 378  Q
    |||||||||||||||||  |||||||||||||||||||    
T  32691794 acacatgtgattacattcaattatgtcattttcttaaa 32691757  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 10002171 - 10002211
Alignment:
Q  341 acacatgtgattacattacattatgtcattttcttaaaatt 381  Q
    |||||||||||||||||| ||||||||||||| || |||||    
T  10002171 acacatgtgattacattaaattatgtcatttttttcaaatt 10002211  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 383
Target Start/End: Complemental strand, 44362717 - 44362675
Alignment:
Q  341 acacatgtgattacattacattatgtcattttcttaaaatttt 383  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||    
T  44362717 acacttgtgattacattaaattatgtcattttctcaaaatttt 44362675  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 13501086 - 13501128
Alignment:
Q  341 acacatgtgattacattacattatgtcattttcttaaaatttt 383  Q
    |||| ||||||||||||  ||||||||||||||||||||||||    
T  13501086 acacttgtgattacattgaattatgtcattttcttaaaatttt 13501128  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 43586013 - 43586062
Alignment:
Q  341 acacatgtgattacattacattatgtcattttcttaaaattttgtctgtg 390  Q
    |||| ||||||||||||  ||||||||||||||| |||||||| ||||||    
T  43586013 acacttgtgattacattgaattatgtcattttctcaaaattttatctgtg 43586062  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 10893877 - 10893914
Alignment:
Q  341 acacatgtgattacattacattatgtcattttcttaaa 378  Q
    |||||||||||||||||  |||||||||||||||||||    
T  10893877 acacatgtgattacattcaattatgtcattttcttaaa 10893914  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 2143862 - 2143902
Alignment:
Q  342 cacatgtgattacattacattatgtcattttcttaaaattt 382  Q
    ||||||||||||||||  ||||||||||||||| |||||||    
T  2143862 cacatgtgattacattgaattatgtcattttctcaaaattt 2143902  T

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