View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14518_low_5 (Length: 363)
Name: NF14518_low_5
Description: NF14518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14518_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 928347 - 928691
Alignment:
| Q |
1 |
aacatggacacgttgacaccgataatactttgagaaaatgaattgaatgtaatcacatatatcgatgttggacactgacatatgttttgatgttgtgtgt |
100 |
Q |
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| T |
928347 |
aacatggacacgttgacaccgataatactttgagaaaatgaattgaatgtaatcacatatatcgatgttggacagtgacatatgttttgatgttgtgtgt |
928446 |
T |
|
| Q |
101 |
tctgcaggtaggaccttcaacatttttcagctcaaaacaatttgaagtttttgatgttgagttattaagcatacaaaactgtgaaagaagaaccgtagga |
200 |
Q |
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| T |
928447 |
tctgcaggtaggaccttcaacatttttcagctcaaaacaatttgaagtttttgatgttgagttattaagcatacaaaactgtgaaagaagaacaatagga |
928546 |
T |
|
| Q |
201 |
ttttactctgatgttgtatgcaattgagataaagctgcaatgtcttcggcacaaa---tattagttaggaactaaattatgatattgctttgaggctgtt |
297 |
Q |
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| T |
928547 |
ttttactctgatgttgtatgtaattgagataaagctccaatgtctttagcacaaatattattagataggaactaaattatgatattgctttgaggctgtt |
928646 |
T |
|
| Q |
298 |
gtcaagtattctttattgttttggtttgtaaccatgtcaatcatc |
342 |
Q |
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| T |
928647 |
gtcaagtattctttattgttttggtttgtaaccatgtcaatcatc |
928691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 38134478 - 38134439
Alignment:
| Q |
2 |
acatggacacgttgacaccgataatactttgagaaaatga |
41 |
Q |
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| T |
38134478 |
acatggacatgttgacaccgataataatttgagaaaatga |
38134439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 35238255 - 35238217
Alignment:
| Q |
3 |
catggacacgttgacaccgataatactttgagaaaatga |
41 |
Q |
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| T |
35238255 |
catggacacattgacaccgataatattttgagaaaatga |
35238217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 13799496 - 13799530
Alignment:
| Q |
7 |
gacacgttgacaccgataatactttgagaaaatga |
41 |
Q |
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| T |
13799496 |
gacacgttgacaccgataatagtttgagaaaatga |
13799530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 15109628 - 15109591
Alignment:
| Q |
12 |
gttgacaccgataatactttgagaaaatgaattgaatg |
49 |
Q |
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| T |
15109628 |
gttgacaccaataataatttgagaaaatgaattgaatg |
15109591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 34625734 - 34625783
Alignment:
| Q |
15 |
gacaccgataatactttgagaaaatg----aattgaatgtaatcacatat |
60 |
Q |
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| T |
34625734 |
gacaccgataataatttgagaaaatgaattaattgaatgtaatcacatat |
34625783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 6117755 - 6117718
Alignment:
| Q |
7 |
gacacgttgacaccgataatactttgagaaaatgaatt |
44 |
Q |
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| T |
6117755 |
gacacgttgacaccgataatattttgataaaatgaatt |
6117718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 29127276 - 29127313
Alignment:
| Q |
7 |
gacacgttgacaccgataatactttgagaaaatgaatt |
44 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
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| T |
29127276 |
gacacgttgacaccgataatcatttgagaaaatgaatt |
29127313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 41831803 - 41831759
Alignment:
| Q |
14 |
tgacaccgataatactttgagaaaatgaattgaatgtaatcacat |
58 |
Q |
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| T |
41831803 |
tgacaccgataagggtttgcgaaaatgaattgaatgtaatcacat |
41831759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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