View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14518_low_7 (Length: 329)
Name: NF14518_low_7
Description: NF14518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14518_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 37844464 - 37844169
Alignment:
| Q |
19 |
agatagcaaagtaaagatgcatgactatatgaaaagtaagatacatgaattaggtccaaggtatagtacaatcaaaagccgatgattatttggtatacac |
118 |
Q |
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| T |
37844464 |
agatagcaaagtgaagatgcatgactatatgaaaagtaagatacatgaattaggtccaaggtatagtacaatcaaaagccgatgattatttggtatacac |
37844365 |
T |
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| Q |
119 |
ttgctatttaaaatgttagtatacattatctagcagactagtatggattcttcaatttgaaatcgtgttcaagggctcgataggtgttgatgtctaacat |
218 |
Q |
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| T |
37844364 |
ttgctatttaaaatgttagtatacattatctagcagactagtatggattcttcaatttgaaatcgtgttcaagggctcgataggtgttgatgtctaacat |
37844265 |
T |
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| Q |
219 |
cgacagaactttgatatatgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggtattggtgcatgtatattgt |
314 |
Q |
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| T |
37844264 |
cgacagaacttcgatacatgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggtatcggtgcatgtatattgt |
37844169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 16331029 - 16330969
Alignment:
| Q |
236 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggta |
296 |
Q |
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| T |
16331029 |
atgtggttacatttaatcattttcattttcttaaattattactagtgtctacatgtcggta |
16330969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 16567342 - 16567286
Alignment:
| Q |
236 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtc |
292 |
Q |
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| T |
16567342 |
atgtggttacattcaatcatttccattttcttaaattattgcatgtgtctacatgtc |
16567286 |
T |
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