View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14518_low_8 (Length: 324)
Name: NF14518_low_8
Description: NF14518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14518_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 112 - 306
Target Start/End: Original strand, 34848239 - 34848442
Alignment:
| Q |
112 |
acatgactattgctaagatgattatgtta---------taatctaaaaaaggaatggaatgtgtagcaccgaccaaaataatcccctcggtgcatatcct |
202 |
Q |
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| T |
34848239 |
acatgactattgctaagatgattatgttaggttttatataatctaaaaaaggaatggaatgtgtagcaccgaccaaaataatcccctcggtgcatatcct |
34848338 |
T |
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| Q |
203 |
tattctaatttatccaaaaggaatcacatatatagtaaacgaaaataattctatattcatataaaattctcccacatacctttcctcctcctacttgggt |
302 |
Q |
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| T |
34848339 |
tattctaatttatccaaaaggaatcacatatatagtaaacgaaaataattctatattcatataaaattctcccacatacctttcctcctcctacttgggt |
34848438 |
T |
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| Q |
303 |
tctt |
306 |
Q |
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|||| |
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| T |
34848439 |
tctt |
34848442 |
T |
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