View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14519_low_1 (Length: 445)
Name: NF14519_low_1
Description: NF14519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14519_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 319
Target Start/End: Complemental strand, 17858007 - 17857699
Alignment:
| Q |
10 |
gagatgaatctaaaattcttgtaggccctctttgctttaaagctttaaagcctccctccaaatctagtggggcatatataacaagcttatatctacagga |
109 |
Q |
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| T |
17858007 |
gagatgaatctaaaattcttgtaggccctctttgctttaaagctttaaagtctccctccaaatctagtggggcatatataacaagcttatatctacagga |
17857908 |
T |
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| Q |
110 |
atggaccataagaaaacagaaacaatatacccttctatttctgttcttgtttaagagtgaattagtgaaaatggtgttccatccttctagaataatgctt |
209 |
Q |
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| T |
17857907 |
atggaccataagaaaacagaaacaatatacc-ttctatttttgttcttgtttaagagtgaattagtgaaaatggtgttccatccttctagaataatgctt |
17857809 |
T |
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| Q |
210 |
cttctctttgttgggttcttaatatctattcaaccaaaggaagtgttaggcttgaaaagtttagaaattgcactaagacatagccaaaaagaccacagga |
309 |
Q |
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| T |
17857808 |
cttctctttgttgggttcttaatatctattcaaccaaaggaagtgtcaggcttgaaaagtttagaaattgcactaagacataaccaaaaagatcacaggg |
17857709 |
T |
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| Q |
310 |
taatgctgca |
319 |
Q |
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| T |
17857708 |
taatgctgca |
17857699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 324 - 426
Target Start/End: Complemental strand, 17857655 - 17857553
Alignment:
| Q |
324 |
acaaagaagaattcagcaaatgttaacaacgtgtctgttccgacaaacaagagttcggctaatgtcaacaacaggtttgatccaaatcaatcaagcaaaa |
423 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17857655 |
acaaagaagaattcggcaaatgttaacaagatgtctgttccgacaaagaagagttcggctaatgtcaacaacaggtttgatccaaatcaatcaagcaaaa |
17857556 |
T |
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| Q |
424 |
gaa |
426 |
Q |
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||| |
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| T |
17857555 |
gaa |
17857553 |
T |
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