View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14519_low_2 (Length: 273)
Name: NF14519_low_2
Description: NF14519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14519_low_2 |
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| [»] scaffold0632 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 36486218 - 36486068
Alignment:
| Q |
107 |
caacacatatcatctacaaactcttcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaag |
206 |
Q |
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| T |
36486218 |
caacacatatcatctacaaactcttcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaag |
36486119 |
T |
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| Q |
207 |
ttgtagtgaaattaagctcattaattaataaatgaaaaaataccttgaaac |
257 |
Q |
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| T |
36486118 |
ttgtagtgaaattaagctcatgaattaataaatgaaaaaagaccttgaaac |
36486068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 28539570 - 28539420
Alignment:
| Q |
107 |
caacacatatcatctacaaactcttcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaag |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28539570 |
caacacatatcatctacaaactcttcactttcttgttctttttattctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaag |
28539471 |
T |
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| Q |
207 |
ttgtagtgaaattaagctcattaattaataaatgaaaaaataccttgaaac |
257 |
Q |
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| T |
28539470 |
ttgtagtgaaattaagctcatgaattaataaatgaaaaaagatcttgaaac |
28539420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 31600164 - 31600314
Alignment:
| Q |
107 |
caacacatatcatctacaaactcttcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaag |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31600164 |
caacacatatcatctacaaactcttcactttcttgttctttttgttctagtccattttcatgaagatatatactatataactgatcaaacgttctgtaag |
31600263 |
T |
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| Q |
207 |
ttgtagtgaaattaagctcattaattaataaatgaaaaaataccttgaaac |
257 |
Q |
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| T |
31600264 |
ttgtagtgaaattaagctcatgaattaataaatgaaaaaagaccttgaaac |
31600314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0632
Description:
Target: scaffold0632; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 2672 - 2579
Alignment:
| Q |
153 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcattaattaataaatgaaaaaa |
246 |
Q |
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| T |
2672 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcatgaattaataaatgaaaaaa |
2579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0632; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 3047 - 3002
Alignment:
| Q |
107 |
caacacatatcatctacaaactcttcactttcttgttctttttgtt |
152 |
Q |
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| T |
3047 |
caacacataccatctacaaattcttcactttcttgttcattttgtt |
3002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 957139 - 957039
Alignment:
| Q |
153 |
ctagtccattttcatgaagatatatactatataactgatcaaacgttttgtaagttgtagtgaaattaagctcattaattaataaatgaaaaaatacctt |
252 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| || |||||| ||||||| ||||| |
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| T |
957139 |
ctagtccattttcatgaagatataaactagataactgatcaaattttttgtaagttgtagtgaaattaagctc----atgaataaacgaaaaaagacctt |
957044 |
T |
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| Q |
253 |
gaaac |
257 |
Q |
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| T |
957043 |
gaaac |
957039 |
T |
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