View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14519_low_4 (Length: 235)

Name: NF14519_low_4
Description: NF14519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14519_low_4
NF14519_low_4
[»] chr8 (9 HSPs)
chr8 (1-235)||(38421113-38421339)
chr8 (1-33)||(25869261-25869293)
chr8 (8-68)||(42215084-42215143)
chr8 (2-105)||(11795064-11795166)
chr8 (16-74)||(4762512-4762569)
chr8 (1-33)||(2594992-2595024)
chr8 (1-33)||(13000419-13000451)
chr8 (1-33)||(14949909-14949941)
chr8 (9-61)||(39866737-39866788)
[»] chr3 (19 HSPs)
chr3 (3-106)||(52618974-52619076)
chr3 (4-106)||(33965486-33965590)
chr3 (1-92)||(33405161-33405252)
chr3 (2-92)||(1217796-1217885)
chr3 (6-92)||(16990161-16990246)
chr3 (1-106)||(41452494-41452598)
chr3 (1-33)||(36200139-36200171)
chr3 (1-33)||(41724255-41724287)
chr3 (2-33)||(12923321-12923352)
chr3 (1-68)||(37273143-37273209)
chr3 (3-33)||(11039336-11039366)
chr3 (3-84)||(34382935-34383015)
chr3 (4-33)||(42817220-42817249)
chr3 (4-107)||(20502066-20502169)
chr3 (4-68)||(20669181-20669244)
chr3 (54-106)||(22232797-22232849)
chr3 (1-33)||(31010445-31010477)
chr3 (2-30)||(37825168-37825196)
chr3 (1-33)||(43115099-43115131)
[»] chr4 (13 HSPs)
chr4 (2-92)||(23819074-23819163)
chr4 (1-106)||(2996544-2996648)
chr4 (44-105)||(10192256-10192317)
chr4 (4-92)||(46415790-46415877)
chr4 (3-106)||(54325034-54325136)
chr4 (2-92)||(29263355-29263444)
chr4 (10-68)||(53673662-53673719)
chr4 (43-92)||(29778780-29778829)
chr4 (13-106)||(49219110-49219202)
chr4 (2-106)||(52735093-52735195)
chr4 (2-33)||(19304969-19305000)
chr4 (1-35)||(25583633-25583667)
chr4 (1-33)||(2841669-2841701)
[»] chr1 (22 HSPs)
chr1 (9-90)||(23902070-23902150)
chr1 (2-91)||(28689448-28689538)
chr1 (2-89)||(27963366-27963452)
chr1 (6-75)||(7262518-7262586)
chr1 (7-92)||(44940326-44940409)
chr1 (2-90)||(4622080-4622167)
chr1 (1-68)||(35350645-35350715)
chr1 (3-106)||(6932958-6933060)
chr1 (2-33)||(12477283-12477314)
chr1 (51-106)||(25006078-25006133)
chr1 (2-33)||(27140521-27140552)
chr1 (2-68)||(34290245-34290310)
chr1 (1-67)||(37593679-37593744)
chr1 (3-64)||(28935873-28935933)
chr1 (5-106)||(30371119-30371219)
chr1 (43-84)||(43332477-43332518)
chr1 (5-106)||(44031998-44032098)
chr1 (1-33)||(3224466-3224498)
chr1 (1-33)||(15064830-15064862)
chr1 (1-33)||(15579525-15579557)
chr1 (1-33)||(45327623-45327655)
chr1 (1-61)||(46252677-46252736)
[»] chr7 (13 HSPs)
chr7 (3-105)||(44151477-44151578)
chr7 (1-91)||(4966142-4966231)
chr7 (6-90)||(24363601-24363684)
chr7 (43-91)||(46104648-46104696)
chr7 (43-106)||(30456486-30456549)
chr7 (1-92)||(46082019-46082111)
chr7 (9-106)||(7623109-7623205)
chr7 (4-33)||(33894670-33894699)
chr7 (3-68)||(39345480-39345544)
chr7 (1-29)||(8341875-8341903)
chr7 (1-33)||(39539776-39539808)
chr7 (1-33)||(39568319-39568351)
chr7 (1-33)||(47134752-47134784)
[»] chr2 (13 HSPs)
chr2 (1-106)||(3673778-3673883)
chr2 (1-75)||(43910994-43911067)
chr2 (1-103)||(43141845-43141946)
chr2 (1-106)||(14666519-14666623)
chr2 (1-33)||(30538168-30538200)
chr2 (1-68)||(34652031-34652097)
chr2 (1-32)||(44606105-44606136)
chr2 (2-92)||(680488-680577)
chr2 (49-106)||(37053565-37053622)
chr2 (1-61)||(1893276-1893335)
chr2 (4-68)||(9530726-9530789)
chr2 (54-106)||(11513869-11513921)
chr2 (1-33)||(43065445-43065477)
[»] chr5 (16 HSPs)
chr5 (2-94)||(13604845-13604936)
chr5 (2-106)||(36639493-36639596)
chr5 (2-92)||(18543193-18543281)
chr5 (3-92)||(2468415-2468504)
chr5 (1-106)||(10272426-10272530)
chr5 (2-106)||(14295477-14295580)
chr5 (1-68)||(12242705-12242771)
chr5 (1-103)||(34205213-34205316)
chr5 (51-106)||(41277394-41277449)
chr5 (1-35)||(18700425-18700459)
chr5 (3-68)||(11707064-11707128)
chr5 (4-33)||(35963284-35963313)
chr5 (11-106)||(12975318-12975411)
chr5 (2-94)||(21768193-21768284)
chr5 (1-33)||(32194074-32194106)
chr5 (2-90)||(32408588-32408675)
[»] scaffold0147 (1 HSPs)
scaffold0147 (1-33)||(12699-12731)
[»] scaffold0024 (1 HSPs)
scaffold0024 (2-106)||(27547-27650)
[»] scaffold0020 (1 HSPs)
scaffold0020 (3-87)||(159970-160053)
[»] scaffold0003 (1 HSPs)
scaffold0003 (2-74)||(306329-306400)
[»] chr6 (8 HSPs)
chr6 (1-33)||(9027621-9027653)
chr6 (1-68)||(30863255-30863321)
chr6 (43-77)||(13907847-13907881)
chr6 (1-106)||(281843-281947)
chr6 (4-33)||(27909636-27909665)
chr6 (3-75)||(4420645-4420716)
chr6 (1-33)||(6536990-6537022)
chr6 (10-106)||(33067130-33067224)
[»] scaffold0311 (1 HSPs)
scaffold0311 (5-33)||(10616-10644)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 38421339 - 38421113
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggact 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||  ||||||||||||||    
T  38421339 acttatgacatgtccataagttgttttcagctt-acttacacaagatcttcaagatagcttttgaaaacaacttacaacttataccaaaacatttggact 38421241  T
Q  101 ttatttgtttttatcttctaagtgtttatccaaacagggtcatttcatttgcaattttcaatttatttcaatattctcaacaacnnnnnnnncacataaa 200  Q
    |||||  ||||||||||| ||||||||||||||||||||     |||||||||||||||||||||||| |||||||||||||||        ||||||||    
T  38421240 ttatt--tttttatcttcaaagtgtttatccaaacaggg-----tcatttgcaattttcaatttatttaaatattctcaacaacaaaaaacacacataaa 38421148  T
Q  201 aattattcaacaatataatatcctcatatagaaac 235  Q
    |||||||||||||||||||||||||||||||||||    
T  38421147 aattattcaacaatataatatcctcatatagaaac 38421113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25869261 - 25869293
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||||||||||||||||    
T  25869261 acttatgacatgtccataagttgttttcagctt 25869293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 42215084 - 42215143
Alignment:
Q  8 acatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    |||||| ||||||||||||||||| ||| ||||| ||||||| ||||||||||| ||||||    
T  42215084 acatgttcataagttgttttcagc-ttatttacataagctctccaagatagcttatgaaaa 42215143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 11795166 - 11795064
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactt 101  Q
    ||||||||||||||||||  |||||||||| ||| || || ||||||| ||  ||||||| |||||  | |||| |||||||||||||||| |  |||||    
T  11795166 cttatgacatgtccataacctgttttcagc-ttatttccataagctctccataatagcttatgaaatcagcttataacttatatgaaaacagtgtgactt 11795068  T
Q  102 tatt 105  Q
    ||||    
T  11795067 tatt 11795064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 4762569 - 4762512
Alignment:
Q  16 ataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaactt 74  Q
    |||| ||||||||||||| | ||||| ||||||||||||||||||| |||||| |||||    
T  4762569 ataaattgttttcagctt-atttacataagctcttcaagatagcttatgaaaacaactt 4762512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2594992 - 2595024
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||| |||||||||||||||||||    
T  2594992 acttatgacatgttcataagttgttttcagctt 2595024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13000419 - 13000451
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||| ||||||||||||||||    
T  13000419 acttatgacatgtccacaagttgttttcagctt 13000451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14949941 - 14949909
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||| ||||||||||||    
T  14949941 acttatgacatgtccataagctgttttcagctt 14949909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 39866737 - 39866788
Alignment:
Q  9 catgtccataagttgttttcagctttacttacacaagctcttcaagatagctt 61  Q
    |||||||||||| ||||||||| |||| || || |||||||||||||||||||    
T  39866737 catgtccataagctgttttcag-tttattttcataagctcttcaagatagctt 39866788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 52619076 - 52618974
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggacttt 102  Q
    ||||||||||| |||||| | |||||| ||| | || |||||||||||||||||||||| |||||| | |||| |||||||||||||||| ||  |||||    
T  52619076 ttatgacatgttcataagctattttcacctt-attttcacaagctcttcaagatagcttgtgaaaacagcttataacttatatgaaaacaatttaacttt 52618978  T
Q  103 attt 106  Q
    ||||    
T  52618977 attt 52618974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 33965486 - 33965590
Alignment:
Q  4 tatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaac--ttatatgaaaacatttggactt 101  Q
    ||||||||| ||||||||| |||||||||||  || || ||||||||||||||||||| |||||| | |||| | |  ||||||||||||| || |||||    
T  33965486 tatgacatgcccataagttattttcagctttttttccataagctcttcaagatagcttatgaaaacatcttatagcttttatatgaaaacagtttgactt 33965585  T
Q  102 tattt 106  Q
    |||||    
T  33965586 tattt 33965590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 33405161 - 33405252
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaaca 92  Q
    |||||||| |||| |||||  ||||||| |||| |||| || ||| ||||||||||||||| |||||| | |||| | ||||||||||||||    
T  33405161 acttatgatatgttcataaactgttttcggcttaactttcataagttcttcaagatagcttatgaaaacagcttatagcttatatgaaaaca 33405252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 1217796 - 1217885
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaaca 92  Q
    |||||||||||||||||||||||||||| | |||||| || ||| |||  | |||||||| |||||| | |||| |||||| |||||||||    
T  1217796 cttatgacatgtccataagttgttttcatc-ttactttcataagttctcaaggatagcttatgaaaacagcttataacttacatgaaaaca 1217885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 16990161 - 16990246
Alignment:
Q  6 tgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaaca 92  Q
    ||||||||| |||||||||||||||| ||| || |||||| |||||| ||||| ||  ||||| |||||| | ||||||||||||||    
T  16990161 tgacatgtctataagttgttttcagc-ttatttgcacaagttcttcatgatagtttaagaaaacaacttatatcttatatgaaaaca 16990246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 41452598 - 41452494
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggact 100  Q
    |||||||| ||||| ||||| |||||||| ||| | || |||||  ||| || |||||||| |||||| | ||||||||| ||||||||||| || ||||    
T  41452598 acttatgatatgtctataagctgttttcacctt-atttccacaacttctccaggatagcttatgaaaacagcttacaactaatatgaaaacagtttgact 41452500  T
Q  101 ttattt 106  Q
    ||||||    
T  41452499 ttattt 41452494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36200171 - 36200139
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||||||||||||||||    
T  36200171 acttatgacatgtccataagttgttttcagctt 36200139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41724287 - 41724255
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||||||||||||||||    
T  41724287 acttatgacatgtccataagttgttttcagctt 41724255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 12923321 - 12923352
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||||||||||||||||    
T  12923321 cttatgacatgtccataagttgttttcagctt 12923352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37273209 - 37273143
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    ||||||||||||||||||||||||||||| | ||| || || ||| ||| ||||||||||| ||||||    
T  37273209 acttatgacatgtccataagttgttttcaac-ttatttccataagttctccaagatagcttatgaaaa 37273143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 11039336 - 11039366
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||||||||||||||    
T  11039336 ttatgacatgtccataagttgttttcagctt 11039366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 34383015 - 34382935
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttata 84  Q
    |||||| ||||| |||||||||||||| ||| | || |  ||||| |||| |||||||| ||||||||||||| ||||||||    
T  34383015 ttatgatatgtctataagttgttttcatctt-attttcttaagcttttcaggatagcttatgaaaagaacttataacttata 34382935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 42817220 - 42817249
Alignment:
Q  4 tatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||||||||||||||    
T  42817220 tatgacatgtccataagttgttttcagctt 42817249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 20502066 - 20502169
Alignment:
Q  4 tatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaaca-tttggacttt 102  Q
    |||||||||||| | | ||||||||||||| | |  || |||||||||| |||||||| |||||| | |||| | | |||||||||||| ||| ||||||    
T  20502066 tatgacatgtccgtcatttgttttcagctt-attctcataagctcttcaggatagcttatgaaaacagcttatagcgtatatgaaaacagttttgacttt 20502164  T
Q  103 atttg 107  Q
    |||||    
T  20502165 atttg 20502169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 20669244 - 20669181
Alignment:
Q  4 tatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    |||||||||| |||||| ||||||| |||| | ||||| ||||||| ||||||||||| ||||||    
T  20669244 tatgacatgttcataagctgttttccgctt-atttacataagctctccaagatagcttatgaaaa 20669181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 22232849 - 22232797
Alignment:
Q  54 gatagcttttgaaaagaacttacaacttatatgaaaacatttggactttattt 106  Q
    |||||||| |||||| | ||||| ||||||||||||||| || ||||||||||    
T  22232849 gatagcttatgaaaatagcttacgacttatatgaaaacagtttgactttattt 22232797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31010477 - 31010445
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||| ||||||||||||    
T  31010477 acttatgacatgtccataagctgttttcagctt 31010445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 37825196 - 37825168
Alignment:
Q  2 cttatgacatgtccataagttgttttcag 30  Q
    |||||||||||||||||||||||||||||    
T  37825196 cttatgacatgtccataagttgttttcag 37825168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43115131 - 43115099
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||| |||||||||||||    
T  43115131 acttatgacatgtccataacttgttttcagctt 43115099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 23819163 - 23819074
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaaca 92  Q
    |||||||||||||||||||||||||||| ||| | ||  | ||||||||||||||||||| |||||| |  ||| ||||||||||||||||    
T  23819163 cttatgacatgtccataagttgttttcatctt-atttctataagctcttcaagatagcttatgaaaacatgttataacttatatgaaaaca 23819074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 2996648 - 2996544
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggact 100  Q
    |||||||||||||||||||| | |||||| ||| | || || | ||||| ||||||||||| |||||| |||||| ||||||||| |||||| || ||||    
T  2996648 acttatgacatgtccataagcttttttcaactt-attttcatacgctctccaagatagcttatgaaaacaacttataacttatataaaaacaatttgact 2996550  T
Q  101 ttattt 106  Q
     |||||    
T  2996549 gtattt 2996544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 10192317 - 10192256
Alignment:
Q  44 agctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactttatt 105  Q
    |||||| || ||||||||||||||| |||||| |||||||||||||||| || |||||||||    
T  10192317 agctctccaggatagcttttgaaaacaacttataacttatatgaaaacaatttgactttatt 10192256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 46415790 - 46415877
Alignment:
Q  4 tatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaaca 92  Q
    |||||||||||||||||||||||||||||    ||||  |||||||  | |||||||| ||||||||||||| ||||| ||||||||||    
T  46415790 tatgacatgtccataagttgttttcagctaattttac-taagctctcgaggatagcttatgaaaagaacttataacttgtatgaaaaca 46415877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 54325034 - 54325136
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggacttt 102  Q
    |||||| ||||||||||| ||||||||| ||||  | || || |||| || ||||||||||||||| | |||| | |||||||||||||| || ||||||    
T  54325034 ttatgatatgtccataagctgttttcag-tttatctccataaactctccatgatagcttttgaaaatagcttatagcttatatgaaaacagtttgacttt 54325132  T
Q  103 attt 106  Q
    ||||    
T  54325133 attt 54325136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 29263444 - 29263355
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaaca 92  Q
    ||||||| |||| ||||||||||||||||| ||| || |||||||||| || |||||||| |||||| ||||||   ||||| ||||||||    
T  29263444 cttatgatatgttcataagttgttttcagc-ttatttccacaagctctgcaggatagcttatgaaaacaacttatcgcttatttgaaaaca 29263355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 53673662 - 53673719
Alignment:
Q  10 atgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    |||||||||||||||||||||| ||| ||||| ||||||| ||||||||||| ||||||    
T  53673662 atgtccataagttgttttcagc-ttatttacataagctctccaagatagcttatgaaaa 53673719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 29778829 - 29778780
Alignment:
Q  43 aagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaaca 92  Q
    |||||||||||| |||||| |||||| |||||||| ||||||||||||||    
T  29778829 aagctcttcaaggtagcttatgaaaacaacttacagcttatatgaaaaca 29778780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 49219202 - 49219110
Alignment:
Q  13 tccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactttattt 106  Q
    ||||||||||||||||||||| | || || || ||||| ||||||| || |||||| |||||| | |||||||||||| | || ||||||||||    
T  49219202 tccataagttgttttcagctt-atttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattt 49219110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 52735195 - 52735093
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactt 101  Q
    ||||||||||||||||| ||| |||| ||||| | || || |||||||||||||||||||  ||||| ||| || |||||||||||||  | || |||||    
T  52735195 cttatgacatgtccatatgttatttt-agctt-atttccataagctcttcaagatagcttacgaaaacaacatataacttatatgaaagtaatttgactt 52735098  T
Q  102 tattt 106  Q
    |||||    
T  52735097 tattt 52735093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 19305000 - 19304969
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||||||||||||||||    
T  19305000 cttatgacatgtccataagttgttttcagctt 19304969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25583667 - 25583633
Alignment:
Q  1 acttatgacatgtccataagttgttttcagcttta 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  25583667 acttatgacatgtccaaaagttgttttcagcttta 25583633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2841701 - 2841669
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||| ||||||||||||||||||    
T  2841701 acttatgacatgtcaataagttgttttcagctt 2841669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 23902070 - 23902150
Alignment:
Q  9 catgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaa 90  Q
    ||||| ||||||||||||||||||| |||| || |||||||  ||||||||||||||||| |||||| | ||||||||||||    
T  23902070 catgtgcataagttgttttcagctt-acttccataagctctctaagatagcttttgaaaacaacttatagcttatatgaaaa 23902150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 28689448 - 28689538
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagct--tttgaaaagaacttacaacttatatgaaaac 91  Q
    |||||||||||||||||||||||||||||| ||| || || ||||| | ||||||||||  | |||||| |||||| | |||||||||||||    
T  28689448 cttatgacatgtccataagttgttttcagc-ttattttcataagctttccaagatagcttatatgaaaacaacttatagcttatatgaaaac 28689538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 27963366 - 27963452
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaa 89  Q
    |||||||||||||||||||||||||| ||| ||| ||| | ||||||| ||  ||||||| |||||| |||||| ||||| |||||||    
T  27963366 cttatgacatgtccataagttgtttttagc-ttatttatataagctctccataatagcttatgaaaacaacttagaacttttatgaaa 27963452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 7262518 - 7262586
Alignment:
Q  6 tgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaactta 75  Q
    |||||||| |||||| |||||||| ||| | || ||||||||||||| |||||||| |||||||||||||    
T  7262518 tgacatgttcataagctgttttcacctt-atttccacaagctcttcaggatagcttatgaaaagaactta 7262586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 44940409 - 44940326
Alignment:
Q  7 gacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaaca 92  Q
    |||||||||||||||| |||||||| ||| || ||||| ||||||| ||||| || |||||| |||||| ||||||| ||||||||    
T  44940409 gacatgtccataagtt-ttttcagc-ttatttccacaacctcttcaggatagattatgaaaacaacttataacttatttgaaaaca 44940326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 4622167 - 4622080
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaa 90  Q
    ||||||||||||||||||| |||||| ||| ||| || |||||||||| ||||||||| | || ||| | |||| | ||||||||||||    
T  4622167 cttatgacatgtccataagctgtttttagc-ttattttcacaagctctccaagatagcatatggaaacagcttatagcttatatgaaaa 4622080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 35350715 - 35350645
Alignment:
Q  1 acttatgacatgtccataagttgttttcagct---ttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    |||||||||||||||||||| |||||||||||   ||| ||||| |||||||| | |||||||| ||||||    
T  35350715 acttatgacatgtccataagctgttttcagctagcttatttacataagctctttaggatagcttatgaaaa 35350645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 6932958 - 6933060
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggacttt 102  Q
    |||||| |||| ||||||||  |||||| |||| || || |||||||||| || | ||| ||||||||||| | ||||| |||||||||| || ||||||    
T  6932958 ttatgatatgttcataagttagtttcag-tttatttccataagctcttcaggacaacttatgaaaagaactaataacttctatgaaaacaatttgacttt 6933056  T
Q  103 attt 106  Q
    ||||    
T  6933057 attt 6933060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 12477283 - 12477314
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||||||||||||||||    
T  12477283 cttatgacatgtccataagttgttttcagctt 12477314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 25006078 - 25006133
Alignment:
Q  51 caagatagcttttgaaaagaacttacaacttatatgaaaacatttggactttattt 106  Q
    ||||||||||| |||||| |||||| | |||||||||||||| || ||||||||||    
T  25006078 caagatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 25006133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 27140552 - 27140521
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||||||||||||||||    
T  27140552 cttatgacatgtccataagttgttttcagctt 27140521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 34290310 - 34290245
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    |||||||||| | ||||||||||||||||| ||| || || ||| ||||||||||||||| ||||||    
T  34290310 cttatgacatattcataagttgttttcagc-ttattttcataagttcttcaagatagcttatgaaaa 34290245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37593679 - 37593744
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaa 67  Q
    ||||||||||||| |||||| |||||||||| ||| || || ||||||||||| ||||||| |||||    
T  37593679 acttatgacatgttcataagctgttttcagc-ttattttcataagctcttcaaaatagcttatgaaa 37593744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 28935873 - 28935933
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttg 64  Q
    |||||||||||||||||||| |||| ||| ||| || || |||||||||| |||||||||||    
T  28935873 ttatgacatgtccataagttttttttagc-ttatttccataagctcttcaggatagcttttg 28935933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 30371219 - 30371119
Alignment:
Q  5 atgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactttat 104  Q
    ||||||||||||||||||||||||||| ||| ||  | | ||||| ||| ||  ||| |||||| |||||| | |||||||||||||| || || |||||    
T  30371219 atgacatgtccataagttgttttcagc-ttatttcaatacgctctccaaaatgtcttatgaaaacaacttatagcttatatgaaaacaatttgagtttat 30371121  T
Q  105 tt 106  Q
    ||    
T  30371120 tt 30371119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 43332518 - 43332477
Alignment:
Q  43 aagctcttcaagatagcttttgaaaagaacttacaacttata 84  Q
    ||||||||||||||||||| |||||| | |||||||||||||    
T  43332518 aagctcttcaagatagcttatgaaaacagcttacaacttata 43332477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 44031998 - 44032098
Alignment:
Q  5 atgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactttat 104  Q
    |||||||||||||||| | |||||||||  | || || ||||||||||||||| |||  ||||| |  ||| | |||||||||||||| || ||||||||    
T  44031998 atgacatgtccataagctattttcagcta-atttccataagctcttcaagataacttaagaaaatagtttatagcttatatgaaaacaatttgactttat 44032096  T
Q  105 tt 106  Q
    ||    
T  44032097 tt 44032098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3224498 - 3224466
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||||||||| |||||||    
T  3224498 acttatgacatgtccataagttgttctcagctt 3224466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15064830 - 15064862
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||| ||||||||||||||||||||||||    
T  15064830 acttatgatatgtccataagttgttttcagctt 15064862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15579557 - 15579525
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||||||||| |||||||    
T  15579557 acttatgacatgtccataagttgttctcagctt 15579525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45327655 - 45327623
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||| |||||||||||||    
T  45327655 acttatgacatgtccataaattgttttcagctt 45327623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 46252677 - 46252736
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagctt 61  Q
    ||||||||||||| ||||||||||||||||  ||| || || ||||||| |||||||||||    
T  46252677 acttatgacatgttcataagttgttttcag-gttattttcataagctctccaagatagctt 46252736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 44151477 - 44151578
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggacttt 102  Q
    |||||||||||||||||| |||||||||| ||| || || ||||| |||||||||| || |||||| |||||| | |||||||| ||||| ||  |||||    
T  44151477 ttatgacatgtccataagatgttttcagc-ttatttccataagcttttcaagatagtttatgaaaacaacttatagcttatatggaaacagttttacttt 44151575  T
Q  103 att 105  Q
    |||    
T  44151576 att 44151578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 4966231 - 4966142
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaac 91  Q
    |||||||| ||||||||||||||||||||| |||| || || |||||||||| ||| |||| |||||| | |||| | || ||||||||||    
T  4966231 acttatgatatgtccataagttgttttcag-tttatttccataagctcttcaggatggcttatgaaaacagcttatacctaatatgaaaac 4966142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 24363601 - 24363684
Alignment:
Q  6 tgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaa 90  Q
    |||||||||||||||||||||||||| ||| || || || |||| || |||||||| |||||| |||||| ||| | ||||||||    
T  24363601 tgacatgtccataagttgttttcagc-ttatttccataacctctccaggatagcttatgaaaacaacttataacctgtatgaaaa 24363684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 46104648 - 46104696
Alignment:
Q  43 aagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaac 91  Q
    ||||||||||||||| |||||||||| |||||| | |||||||||||||    
T  46104648 aagctcttcaagatatcttttgaaaacaacttatagcttatatgaaaac 46104696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 30456486 - 30456549
Alignment:
Q  43 aagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactttattt 106  Q
    ||||||| |||||||| || ||||||  ||||| |||||||||||||||| || ||||||||||    
T  30456486 aagctctccaagatagtttatgaaaaccacttataacttatatgaaaacaatttgactttattt 30456549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 46082111 - 46082019
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagc--ttttgaaaagaacttacaacttatatgaaaaca 92  Q
    |||||||||||| |||||||||||||||||| ||| || || ||||||| ||  |||||   | |||||| |||||| ||||||||||||||||    
T  46082111 acttatgacatgaccataagttgttttcagc-ttattttcataagctctccagaatagcgtctatgaaaacaacttataacttatatgaaaaca 46082019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 7623205 - 7623109
Alignment:
Q  9 catgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactttattt 106  Q
    |||||||||||||||||||  |||| | || |  || ||||||||||||| || |||||| | |||||| ||||||| |||| | |||||||||||||    
T  7623205 catgtccataagttgtttttggctt-attttcgtaaactcttcaagatagtttatgaaaatagcttacagcttatataaaaagagttggactttattt 7623109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 33894699 - 33894670
Alignment:
Q  4 tatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||||||||||||||    
T  33894699 tatgacatgtccataagttgttttcagctt 33894670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 39345544 - 39345480
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    ||||||||||||||||||||| ||||||| ||| || || ||| || ||| |||||||||||||||    
T  39345544 ttatgacatgtccataagttgctttcagc-ttatttccataaggtcgtcaggatagcttttgaaaa 39345480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8341903 - 8341875
Alignment:
Q  1 acttatgacatgtccataagttgttttca 29  Q
    |||||||||||||||||||||||||||||    
T  8341903 acttatgacatgtccataagttgttttca 8341875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39539776 - 39539808
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||| ||||||||||||    
T  39539776 acttatgacatgtccataagctgttttcagctt 39539808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39568319 - 39568351
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||||||||||| ||||    
T  39568319 acttatgacatgtccataagttgttttcggctt 39568351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47134752 - 47134784
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||| ||||||||||||||||||||||    
T  47134752 acttatgacacgtccataagttgttttcagctt 47134784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 3673883 - 3673778
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt-tacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggac 99  Q
    ||||||||||||| |||||||| |||| ||||| || ||   |||||||||||||||||||  |||||| |||||| |||||||||||||||| ||  ||    
T  3673883 acttatgacatgtgcataagtt-ttttgagcttatatttctgcaagctcttcaagatagctaatgaaaaaaacttataacttatatgaaaacaatttaac 3673785  T
Q  100 tttattt 106  Q
    |||||||    
T  3673784 tttattt 3673778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43910994 - 43911067
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaactta 75  Q
    ||||||||||||| ||||||||||||||||| ||| |  |||||||| | |||||||||||||||||| ||||||    
T  43910994 acttatgacatgttcataagttgttttcagc-ttattatcacaagctttccaagatagcttttgaaaacaactta 43911067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 43141946 - 43141845
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggact 100  Q
    |||||||||||| ||||||||||||||||  |||| || || || ||||||| |||||||| |||||| | |||| | |||||||| ||||| || ||||    
T  43141946 acttatgacatgcccataagttgttttca-ttttatttccataaactcttcaggatagcttatgaaaacatcttatagcttatatggaaacaatttgact 43141848  T
Q  101 tta 103  Q
    |||    
T  43141847 tta 43141845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 14666623 - 14666519
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggact 100  Q
    ||||||||||||| |||| |||||||||| ||| | || || ||||    ||||||||||| |||||| |||||| ||||||||||||| || || ||||    
T  14666623 acttatgacatgttcataggttgttttcacctt-attttcataagcataccaagatagcttgtgaaaacaacttataacttatatgaaatcagtttgact 14666525  T
Q  101 ttattt 106  Q
    ||||||    
T  14666524 ttattt 14666519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30538168 - 30538200
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||||||||||||||||    
T  30538168 acttatgacatgtccataagttgttttcagctt 30538200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34652031 - 34652097
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    |||||||||||||||||||| |||||||| | ||| || || ||||||| ||||||||||| ||||||    
T  34652031 acttatgacatgtccataagctgttttcaac-ttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 44606105 - 44606136
Alignment:
Q  1 acttatgacatgtccataagttgttttcagct 32  Q
    ||||||||||||||||||||||||||||||||    
T  44606105 acttatgacatgtccataagttgttttcagct 44606136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 680577 - 680488
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaaca 92  Q
    ||||||||||||  ||||  |||||||||||| | || |||||| ||||||||||||||| |||||| | |||| | |||||| |||||||    
T  680577 cttatgacatgtttataaactgttttcagctt-attttcacaagttcttcaagatagcttatgaaaatagcttatagcttatacgaaaaca 680488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 37053622 - 37053565
Alignment:
Q  49 ttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactttattt 106  Q
    |||| |||||||  |||||| |||||| |||||||||||||||| || ||||||||||    
T  37053622 ttcatgatagctaatgaaaaaaacttataacttatatgaaaacagtttgactttattt 37053565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1893276 - 1893335
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagctt 61  Q
    ||||||||||||| |||||||| |||||||| ||| || |||||| ||| |||||||||||    
T  1893276 acttatgacatgtacataagttattttcagc-ttattttcacaagttctccaagatagctt 1893335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 9530726 - 9530789
Alignment:
Q  4 tatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    ||||||||||||||||||| |||| ||| |||||| || ||||||| || |||||||| ||||||    
T  9530726 tatgacatgtccataagttatttttagc-ttactttcataagctctccaggatagcttatgaaaa 9530789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 11513921 - 11513869
Alignment:
Q  54 gatagcttttgaaaagaacttacaacttatatgaaaacatttggactttattt 106  Q
    |||||||| |||||| |||||| | |||||||||||||| || ||||||||||    
T  11513921 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattt 11513869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43065445 - 43065477
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||| |||||||||||||    
T  43065445 acttatgacatgtccataaattgttttcagctt 43065477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 13604845 - 13604936
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatt 94  Q
    ||||||||||||||||| |||||||||| | ||| || || ||||||||||||||| ||| |||||| | |||| |  |||||||||||||||    
T  13604845 cttatgacatgtccatacgttgttttcaac-ttattttcataagctcttcaagataacttatgaaaacagcttaaagtttatatgaaaacatt 13604936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 36639596 - 36639493
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactt 101  Q
    |||||||| ||||||||||||||||||  | ||| || || ||||||||||||||||||| |||||| |   || ||||| ||||||||||||| || ||    
T  36639596 cttatgacgtgtccataagttgttttcctc-ttattttcataagctcttcaagatagcttatgaaaacagtctataacttgtatgaaaacattttgattt 36639498  T
Q  102 tattt 106  Q
    |||||    
T  36639497 tattt 36639493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 18543193 - 18543281
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaaca 92  Q
    |||||||||||||||| |||||||||||||||   || || ||||||| || |||||||| |||||| |||||| | ||||||| ||||||    
T  18543193 cttatgacatgtccatgagttgttttcagctt--atttcataagctctccaggatagcttatgaaaacaacttatatcttatataaaaaca 18543281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 2468504 - 2468415
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaac-ttacaacttatatgaaaaca 92  Q
    |||||||||||||||||| |||||| ||| |||||| || || ||||||| |||||||| | |||||||| ||||| ||| ||||||||||    
T  2468504 ttatgacatgtccataagctgttttgagc-ttacttccataaactcttcaggatagcttataaaaagaactttacagcttttatgaaaaca 2468415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 10272426 - 10272530
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggact 100  Q
    ||||||||||||||  ||||||||||||||| ||| || || || |||| |||||| |||| |||||| |||||| | |||||| ||||||| || ||||    
T  10272426 acttatgacatgtctgtaagttgttttcagc-ttattttcataaactctccaagatggcttatgaaaacaacttatagcttatacgaaaacaatttgact 10272524  T
Q  101 ttattt 106  Q
    | ||||    
T  10272525 taattt 10272530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 14295580 - 14295477
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactt 101  Q
    ||||||| ||||| ||||| |||||||||||| ||||  | ||||||| || ||||||||  ||||| | |||| | |||||||||||||| || |||||    
T  14295580 cttatgatatgtcgataagctgttttcagctt-acttctaaaagctctccaggatagcttacgaaaacagcttatagcttatatgaaaacagtttgactt 14295482  T
Q  102 tattt 106  Q
    |||||    
T  14295481 tattt 14295477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12242705 - 12242771
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    ||||||||||||  ||| ||||||||||||| |||||| || ||||||| ||||||||||| ||||||    
T  12242705 acttatgacatgaacattagttgttttcagc-ttacttccataagctctccaagatagcttatgaaaa 12242771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34205316 - 34205213
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctctt-caagatagcttttgaaaagaacttacaacttatatgaaaacatttggac 99  Q
    ||||||| ||||| |||||||||||||||  |||| || || ||||| || ||||||||||| |||||| |||||| | ||||||| |||| | || |||    
T  34205316 acttatgtcatgttcataagttgttttcacatttatttccataagctttttcaagatagcttatgaaaacaacttatagcttatataaaaataatttgac 34205217  T
Q  100 ttta 103  Q
    ||||    
T  34205216 ttta 34205213  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 41277394 - 41277449
Alignment:
Q  51 caagatagcttttgaaaagaacttacaacttatatgaaaacatttggactttattt 106  Q
    ||||||||||| |||||| |||||  |||||||||||||||| || ||||||||||    
T  41277394 caagatagcttatgaaaacaacttttaacttatatgaaaacagtttgactttattt 41277449  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18700459 - 18700425
Alignment:
Q  1 acttatgacatgtccataagttgttttcagcttta 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  18700459 acttatgacatgtctataagttgttttcagcttta 18700425  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 11707128 - 11707064
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    |||||||||||  |||||||||||||||| ||| || || ||||||| ||||||||||| ||||||    
T  11707128 ttatgacatgtttataagttgttttcagc-ttattttcaaaagctctacaagatagcttatgaaaa 11707064  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 35963313 - 35963284
Alignment:
Q  4 tatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||||||||||||||    
T  35963313 tatgacatgtccataagttgttttcagctt 35963284  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 12975411 - 12975318
Alignment:
Q  11 tgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactttattt 106  Q
    ||||||||||||||||||| |||   || || ||||||| ||||||||||| |||| | | |||| | |||||||||||||| || || |||||||    
T  12975411 tgtccataagttgttttcaactta--ttccataagctctccaagatagcttatgaacacagcttatagcttatatgaaaacaatttgattttattt 12975318  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 21768193 - 21768284
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatt 94  Q
    ||||||||||||||||| | |||||||| ||| | || |  ||||||||||||||| ||| |||||| | |||| |  |||||||||||||||    
T  21768193 cttatgacatgtccatacgctgttttcaactt-attttcgtaagctcttcaagataacttatgaaaacagcttaaagtttatatgaaaacatt 21768284  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32194074 - 32194106
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||| |||||||||||||||||||||    
T  32194074 acttatgacatttccataagttgttttcagctt 32194106  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 32408588 - 32408675
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaa 90  Q
    |||||||||||||| ||||||| |||| || ||| || || |||||||||| |||||||| |||||| |  ||| | ||||||||||||    
T  32408588 cttatgacatgtccgtaagttggtttctgc-ttatttccataagctcttcaggatagcttatgaaaatagtttatagcttatatgaaaa 32408675  T

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Target: scaffold0147 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12699 - 12731
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||||||||||||||||    
T  12699 acttatgacatgtccataagttgttttcagctt 12731  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 27650 - 27547
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactt 101  Q
    ||||||||||| | |||||||||||||||||| | || |||| |||   |||||||| || |||||| |||||| |  ||||||||||||| || |||||    
T  27650 cttatgacatggctataagttgttttcagctt-atttccacacgcttaccaagatagtttatgaaaacaacttatagtttatatgaaaacaatttgactt 27552  T
Q  102 tattt 106  Q
    |||||    
T  27551 tattt 27547  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 159970 - 160053
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatga 87  Q
    |||||||||||| |||||  ||||||||||| | || ||||||||||| | |||||||| |||||| | |||| |||||||||||    
T  159970 ttatgacatgtctataagcagttttcagctt-atttccacaagctctttaggatagcttatgaaaacatcttataacttatatga 160053  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 306400 - 306329
Alignment:
Q  2 cttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaactt 74  Q
    ||||||||||| ||||||| |||||||||| ||||||||| |||||||  | |||||||| |||||| |||||    
T  306400 cttatgacatgcccataagctgttttcagc-ttacttacataagctctctaggatagcttatgaaaacaactt 306329  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9027653 - 9027621
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||||||||||||||||    
T  9027653 acttatgacatgtccataagttgttttcagctt 9027621  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30863321 - 30863255
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaa 68  Q
    ||||||||||||| ||||||||||||||||| ||||||  | |||||||||||| |||| | ||||||    
T  30863321 acttatgacatgtacataagttgttttcagc-ttacttctataagctcttcaagctagcctatgaaaa 30863255  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 13907881 - 13907847
Alignment:
Q  43 aagctcttcaagatagcttttgaaaagaacttaca 77  Q
    |||||||||||||||||||||||||| ||||||||    
T  13907881 aagctcttcaagatagcttttgaaaacaacttaca 13907847  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 281843 - 281947
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggact 100  Q
    |||||||||||||| |||||||||||||||||| | || ||  ||||||  | |||||||| |||| | | |||| | ||||||||||||||  | ||||    
T  281843 acttatgacatgtctataagttgttttcagctt-atttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaacaagttgact 281941  T
Q  101 ttattt 106  Q
    ||||||    
T  281942 ttattt 281947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 27909636 - 27909665
Alignment:
Q  4 tatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||||||||||||||||||||    
T  27909636 tatgacatgtccataagttgttttcagctt 27909665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 4420716 - 4420645
Alignment:
Q  3 ttatgacatgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaactta 75  Q
    ||||||||||| |||||| |||||||||| ||| || || ||||||| |||||||||||  ||||| ||||||    
T  4420716 ttatgacatgttcataagctgttttcagc-ttatttccataagctctccaagatagcttaggaaaataactta 4420645  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6537022 - 6536990
Alignment:
Q  1 acttatgacatgtccataagttgttttcagctt 33  Q
    ||||||||||||| |||||||||||||||||||    
T  6537022 acttatgacatgttcataagttgttttcagctt 6536990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 33067224 - 33067130
Alignment:
Q  10 atgtccataagttgttttcagctttacttacacaagctcttcaagatagcttttgaaaagaacttacaacttatatgaaaacatttggactttattt 106  Q
    |||||||||| | |||||||| |||| ||  ||||||||| ||||||||||| |||||| |||||| | | || ||||||||| || ||||||||||    
T  33067224 atgtccataaatcgttttcag-tttatttctacaagctctccaagatagcttatgaaaacaacttatagc-taaatgaaaacaattcgactttattt 33067130  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 10616 - 10644
Alignment:
Q  5 atgacatgtccataagttgttttcagctt 33  Q
    |||||||||||||||||||||||||||||    
T  10616 atgacatgtccataagttgttttcagctt 10644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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