View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14520_high_10 (Length: 330)
Name: NF14520_high_10
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14520_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 44553924 - 44554213
Alignment:
| Q |
14 |
atatgtaccttacaaacataaataagacaagaaagcaattttacaatagagcaaacaattactgttctcctctttcattgtatcatctgccttctttcca |
113 |
Q |
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| T |
44553924 |
atatgtaacttacaaacataaataagacaagaaagcaattttacaatagagcaaacgattactgttctcctctttcattgtatcatttgccttctttcca |
44554023 |
T |
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| Q |
114 |
gcgtgacacacaaaccgccgttgcctttcctttctcaacaaaccgtcgtgcttgtttcttcttcaacaacaggtcgccgctgctgccttctgattttcgg |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || |||||| |
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| T |
44554024 |
gcgtgacacacaaaccgccgctgcctttcctttctcaacaaaccgccgtgcttgtttcttcttcaacaacaggtcgccgccgctgccttatgtttttcg- |
44554122 |
T |
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| Q |
214 |
tcaacccnnnnnnngtctgcactattctccgtgcaattccgaccccttccaccgttctccgcgcgattctgaaaaatccgctgcaattcaatcacatctc |
313 |
Q |
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|| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44554123 |
--------------gtatgcactcttcaccgtgcaattccgaccccttccaccgttctccgcgcgattctgaaaaatccgctgcaattcaatcacatctc |
44554208 |
T |
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