View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14520_high_11 (Length: 325)
Name: NF14520_high_11
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14520_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 968645 - 968953
Alignment:
| Q |
1 |
aagtcttgaattaaaaaataaaatatgggtggaagatcaaatatcaaggatggtgcagggttggtgtcaattgtttgtaacagacaacaaagggataatg |
100 |
Q |
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| T |
968645 |
aagtcttgaattaaaaaataaaatatgggtggaagatcaaatatcaaggatggtgcagggttggtgtcaattgtttgtaacagacaacaaagggataata |
968744 |
T |
|
| Q |
101 |
tgtttccttgtgtcaggaaggatatatnnnnnnnnnnnnntccatcaaatatatattcattttcaagagtatatgccaaaggaatcgatacgaannnnnn |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
968745 |
tgtttccttgtgtcaggaaggatatataaaaaaataaaaatccatcaaatatatattaattttcaagagtatatgccaaaggaatcgatacgaattttta |
968844 |
T |
|
| Q |
201 |
nnnnnnagggtg--tatatatatgtattgattcatgcacgtttctggaggaagtttctgtaggtacgctaattttgtttatagattaggttgtcgtcttc |
298 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
968845 |
atttttagggtgtatatatatatgtattgattcatgtacgtttctggaggaagtttctgtaggtacgctaatttagtttatagattaggttgtcgtcttc |
968944 |
T |
|
| Q |
299 |
tacaaatct |
307 |
Q |
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||||||||| |
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| T |
968945 |
tacaaatct |
968953 |
T |
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