View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14520_high_13 (Length: 304)

Name: NF14520_high_13
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14520_high_13
NF14520_high_13
[»] chr5 (1 HSPs)
chr5 (16-304)||(18982585-18982873)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 18982585 - 18982873
Alignment:
Q  16 ttctcctccactcaagaaataggtgaaaactttcctcaacctagagttcttgagtacttgcatcaagttctaagaattgaaaagcaaaaattacttgatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18982585 ttctcctccactcaagaaataggtgaaaactttcctcaacctagagttcttgagtatttgcatcaagttctaagaattgaaaagcaaaaattacttgatt 18982684  T
Q  116 aagttctaaaaagacgaagccatcttcttctgtttaatcaagtcttcgcaacaggtattcaacctgcacttcttttgtgagaggcattatccatttacca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18982685 aagttctaaaaagacgaagccatcttcttctgtttaatcaagtcttcgcaacaggtattcaacctgcacttcttttgtgagaggcattatccatttacca 18982784  T
Q  216 taaagattgccaatcaaacctgacttgattctatatacaggatcagctacatcaccagcttcattgatctttacctcttgactaaatgt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18982785 taaagattgccaatcaaacctgacttgattctatatacaggatcagctacatcaccagcttcattgatctttacctcttgactaaatgt 18982873  T

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