View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14520_high_2 (Length: 502)

Name: NF14520_high_2
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14520_high_2
NF14520_high_2
[»] chr2 (34 HSPs)
chr2 (36-472)||(31469258-31469682)
chr2 (1-40)||(12256937-12256976)
chr2 (1-40)||(38598345-38598384)
chr2 (1-41)||(19523397-19523437)
chr2 (1-40)||(5852510-5852549)
chr2 (1-40)||(11152695-11152734)
chr2 (1-40)||(38027611-38027650)
chr2 (1-40)||(43205129-43205168)
chr2 (143-197)||(15570079-15570133)
chr2 (8-40)||(18749366-18749398)
chr2 (1-37)||(26387855-26387891)
chr2 (4-40)||(30340029-30340065)
chr2 (1-41)||(35798244-35798284)
chr2 (1-37)||(44897665-44897701)
chr2 (1-36)||(4723606-4723641)
chr2 (1-40)||(9384411-9384450)
chr2 (5-40)||(17999782-17999817)
chr2 (1-40)||(18508114-18508153)
chr2 (1-40)||(28264564-28264603)
chr2 (1-40)||(28679164-28679203)
chr2 (1-35)||(31635806-31635840)
chr2 (1-35)||(41868365-41868399)
chr2 (1-29)||(6885476-6885504)
chr2 (1-29)||(11126511-11126539)
chr2 (8-40)||(13850187-13850219)
chr2 (1-29)||(16051384-16051412)
chr2 (1-29)||(16051413-16051441)
chr2 (5-41)||(16463325-16463361)
chr2 (8-40)||(20247870-20247902)
chr2 (4-40)||(23141389-23141425)
chr2 (4-40)||(23553179-23553215)
chr2 (1-40)||(34141478-34141518)
chr2 (8-40)||(34373041-34373073)
chr2 (8-40)||(40721807-40721839)
[»] chr7 (30 HSPs)
chr7 (96-198)||(15736778-15736880)
chr7 (1-41)||(22331207-22331247)
chr7 (143-198)||(12962670-12962725)
chr7 (1-40)||(41538518-41538557)
chr7 (1-40)||(41910181-41910220)
chr7 (1-40)||(47945019-47945058)
chr7 (1-40)||(47950449-47950488)
chr7 (1-40)||(48639379-48639418)
chr7 (1-40)||(17039193-17039232)
chr7 (1-40)||(27704471-27704510)
chr7 (1-40)||(41030319-41030358)
chr7 (1-38)||(39415456-39415493)
chr7 (1-41)||(41666947-41666987)
chr7 (4-40)||(45335898-45335934)
chr7 (1-40)||(1709320-1709359)
chr7 (1-40)||(23034309-23034348)
chr7 (1-40)||(27866533-27866572)
chr7 (5-40)||(29923707-29923742)
chr7 (1-40)||(33465035-33465074)
chr7 (1-36)||(40108164-40108199)
chr7 (154-184)||(26336619-26336649)
chr7 (8-37)||(10591340-10591369)
chr7 (143-184)||(13931843-13931884)
chr7 (8-40)||(640428-640460)
chr7 (8-40)||(28548224-28548256)
chr7 (8-40)||(30538662-30538694)
chr7 (8-40)||(37969967-37969999)
chr7 (8-40)||(41458903-41458935)
chr7 (145-189)||(44215174-44215218)
chr7 (1-29)||(49142513-49142541)
[»] chr6 (14 HSPs)
chr6 (96-198)||(1579495-1579597)
chr6 (98-184)||(29617194-29617279)
chr6 (143-180)||(34968936-34968973)
chr6 (1-40)||(22422186-22422225)
chr6 (1-40)||(9395333-9395372)
chr6 (1-40)||(17442858-17442897)
chr6 (1-40)||(25567486-25567525)
chr6 (1-36)||(27790231-27790266)
chr6 (1-40)||(32135427-32135466)
chr6 (1-35)||(21506377-21506411)
chr6 (10-40)||(34792058-34792088)
chr6 (139-184)||(35173840-35173885)
chr6 (1-41)||(608655-608695)
chr6 (8-40)||(25995478-25995510)
[»] chr5 (19 HSPs)
chr5 (96-197)||(11233279-11233380)
chr5 (1-40)||(36899477-36899516)
chr5 (1-40)||(4820191-4820230)
chr5 (1-40)||(7080566-7080605)
chr5 (1-40)||(18729285-18729324)
chr5 (1-40)||(20985525-20985564)
chr5 (1-40)||(22653691-22653730)
chr5 (1-40)||(34693212-34693251)
chr5 (1-40)||(37821121-37821160)
chr5 (1-40)||(39032600-39032639)
chr5 (1-40)||(3031870-3031909)
chr5 (1-36)||(9940096-9940131)
chr5 (1-40)||(12203183-12203222)
chr5 (1-40)||(12891092-12891131)
chr5 (1-36)||(14126456-14126491)
chr5 (5-40)||(17574224-17574259)
chr5 (1-35)||(11880983-11881017)
chr5 (3-35)||(34400659-34400691)
chr5 (5-41)||(42364464-42364500)
[»] chr3 (34 HSPs)
chr3 (141-198)||(11765210-11765267)
chr3 (1-40)||(1402686-1402725)
chr3 (2-40)||(29555835-29555873)
chr3 (139-184)||(51859016-51859061)
chr3 (1-40)||(14839041-14839080)
chr3 (1-40)||(29057684-29057723)
chr3 (1-40)||(30664539-30664578)
chr3 (1-40)||(35368647-35368686)
chr3 (1-40)||(50745585-50745624)
chr3 (1-40)||(2935507-2935546)
chr3 (1-40)||(21481800-21481839)
chr3 (1-40)||(29525269-29525308)
chr3 (1-40)||(29846887-29846926)
chr3 (1-40)||(32151924-32151963)
chr3 (1-40)||(34900676-34900715)
chr3 (1-40)||(43149339-43149378)
chr3 (1-40)||(43220137-43220176)
chr3 (1-40)||(44689839-44689878)
chr3 (5-40)||(48490513-48490548)
chr3 (1-40)||(49361831-49361870)
chr3 (154-184)||(11758869-11758899)
chr3 (1-35)||(47988481-47988515)
chr3 (1-35)||(47997768-47997802)
chr3 (1-35)||(48007055-48007089)
chr3 (1-29)||(7934022-7934050)
chr3 (1-29)||(8627904-8627932)
chr3 (8-40)||(9557925-9557957)
chr3 (8-40)||(16295500-16295532)
chr3 (1-41)||(27276769-27276809)
chr3 (1-29)||(37585478-37585506)
chr3 (1-29)||(37710451-37710479)
chr3 (8-40)||(50025701-50025733)
chr3 (1-29)||(51032620-51032648)
chr3 (1-29)||(51385436-51385464)
[»] chr1 (29 HSPs)
chr1 (1-41)||(29638750-29638790)
chr1 (1-40)||(5574255-5574294)
chr1 (1-40)||(30414900-30414939)
chr1 (1-40)||(48962022-48962061)
chr1 (1-40)||(51727996-51728035)
chr1 (1-37)||(12990465-12990501)
chr1 (1-40)||(11121517-11121556)
chr1 (1-40)||(33111907-33111946)
chr1 (1-40)||(48390073-48390112)
chr1 (1-37)||(29094742-29094778)
chr1 (1-41)||(48256942-48256982)
chr1 (1-40)||(1100253-1100292)
chr1 (1-40)||(2854956-2854995)
chr1 (1-40)||(8577498-8577537)
chr1 (1-36)||(17167889-17167924)
chr1 (1-40)||(31244729-31244768)
chr1 (1-40)||(35030758-35030797)
chr1 (1-40)||(40118711-40118750)
chr1 (1-40)||(50460708-50460747)
chr1 (1-35)||(25098784-25098818)
chr1 (4-41)||(40240110-40240147)
chr1 (8-40)||(2827713-2827745)
chr1 (8-40)||(11897210-11897242)
chr1 (8-40)||(12999825-12999857)
chr1 (4-40)||(16252758-16252794)
chr1 (8-40)||(22674748-22674780)
chr1 (1-41)||(37947216-37947256)
chr1 (1-29)||(44672026-44672054)
chr1 (8-40)||(49615280-49615312)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-40)||(48690-48729)
[»] chr8 (31 HSPs)
chr8 (1-40)||(37294630-37294669)
chr8 (1-40)||(6243070-6243109)
chr8 (1-40)||(20995054-20995093)
chr8 (1-40)||(22836135-22836174)
chr8 (1-40)||(23709012-23709051)
chr8 (1-40)||(25430682-25430721)
chr8 (1-40)||(34838266-34838305)
chr8 (143-198)||(34909097-34909152)
chr8 (1-39)||(43605649-43605687)
chr8 (1-40)||(4148651-4148690)
chr8 (1-36)||(9985674-9985709)
chr8 (1-40)||(13924047-13924086)
chr8 (1-40)||(18550015-18550054)
chr8 (1-40)||(27300382-27300421)
chr8 (1-36)||(28713133-28713168)
chr8 (1-36)||(28720480-28720515)
chr8 (1-36)||(28728122-28728157)
chr8 (1-40)||(37471679-37471718)
chr8 (1-40)||(43590730-43590769)
chr8 (1-35)||(7279922-7279956)
chr8 (1-35)||(9550403-9550437)
chr8 (1-35)||(42716361-42716395)
chr8 (11-40)||(9314447-9314476)
chr8 (143-184)||(32057278-32057319)
chr8 (3-40)||(41776211-41776248)
chr8 (4-40)||(21649167-21649203)
chr8 (8-40)||(32674235-32674267)
chr8 (1-41)||(33692756-33692796)
chr8 (1-41)||(34883198-34883238)
chr8 (8-40)||(38939192-38939224)
chr8 (8-40)||(40459765-40459797)
[»] chr4 (37 HSPs)
chr4 (1-40)||(18944315-18944354)
chr4 (1-40)||(21766583-21766622)
chr4 (139-198)||(26885844-26885903)
chr4 (1-40)||(32294756-32294795)
chr4 (1-40)||(36364781-36364820)
chr4 (1-40)||(46799792-46799831)
chr4 (1-40)||(4577593-4577632)
chr4 (1-40)||(4878003-4878042)
chr4 (1-40)||(6126889-6126928)
chr4 (1-40)||(8614212-8614251)
chr4 (1-40)||(36110170-36110209)
chr4 (1-40)||(45521575-45521614)
chr4 (1-36)||(50291322-50291357)
chr4 (1-42)||(1728083-1728124)
chr4 (1-40)||(1868889-1868928)
chr4 (1-40)||(6686082-6686121)
chr4 (1-40)||(9095973-9096012)
chr4 (1-40)||(24310517-24310556)
chr4 (1-40)||(29577432-29577471)
chr4 (1-40)||(48650252-48650291)
chr4 (1-40)||(54803324-54803363)
chr4 (1-40)||(54848174-54848213)
chr4 (1-35)||(9472509-9472543)
chr4 (1-35)||(34259856-34259890)
chr4 (1-35)||(39881026-39881060)
chr4 (143-184)||(13744134-13744175)
chr4 (2-35)||(15515825-15515858)
chr4 (3-40)||(31413784-31413821)
chr4 (143-172)||(47326260-47326289)
chr4 (143-172)||(47341056-47341085)
chr4 (8-40)||(5208330-5208362)
chr4 (8-40)||(34537966-34537998)
chr4 (1-41)||(39699462-39699502)
chr4 (1-29)||(40755968-40755996)
chr4 (8-40)||(46686269-46686301)
chr4 (1-29)||(55996469-55996497)
chr4 (1-41)||(56264867-56264907)
[»] scaffold0514 (1 HSPs)
scaffold0514 (1-40)||(1841-1880)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-40)||(145097-145136)
[»] scaffold0018 (1 HSPs)
scaffold0018 (5-41)||(48220-48256)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 36 - 472
Target Start/End: Original strand, 31469258 - 31469682
Alignment:
Q  36 acaaattcttttacgcttggggtttacaatgcttttacgcttcaagttgtgagttgtgagtttaataataatatatcaaaggccgaaaatgaatgtcagc 135  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||||||||    
T  31469258 acaaactcttttacgattggggtttacaatgcttttacgcttcaagtt-------gtgagtttaataataatatatcaacggccgaaaatgaatgtcagc 31469350  T
Q  136 atcaatttgcacaacttttgcatggtgcacaaatcttttccttgtgcattgtaagccccacccgttacaatgatatattttgataagttttggtaatata 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31469351 atcaatttgcacaacttttgcatggtgcacaaatcttttccttgtgcattgtaaaccccacccgttacaatgatatattttgataagttttggtaatata 31469450  T
Q  236 acattgcttttacgcttcnnnnnnncattgtctaaaagtgtttaaccgtgtaggaaatacacacgacttaaaaagcggtgtctnnnnnnnngttgtctaa 335  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  31469451 acattgcttttacgcttcaaaaaaacattgtctaaaagtgtttaaccgtgtaggaaatacacacgacttaaaaagcggtgtctaaaaaaaagttgtctaa 31469550  T
Q  336 aatcatttttgtgtagtannnnnnnnctttctgtttttgagagagacatgataaataaataattttaaatagatgcttggataatgcatgtgaaaacaaa 435  Q
    |||||  |||||||||||         ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31469551 aatca--tttgtgtagtatttttt---tttctgtttttgagagagagatgataaataaataattttaaatagatgtttggataatgcatgtgaaaacaaa 31469645  T
Q  436 aacgaaaattaatgtatatttatttttaacttgtaca 472  Q
    ||||||||| |||||||||||||||||||||||||||    
T  31469646 aacgaaaatcaatgtatatttatttttaacttgtaca 31469682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12256976 - 12256937
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12256976 taagaagataatgtgagtatgagagagaaggttgtacaaa 12256937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38598345 - 38598384
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38598345 taagaagataatgtgagtatgagagagaaggttgtacaaa 38598384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19523397 - 19523437
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  19523397 taagaagataatgtgagtatgagagagaaagttgtacaaat 19523437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5852549 - 5852510
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  5852549 taagaaaataatgtgagtatgagagagaaggttgtacaaa 5852510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11152695 - 11152734
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  11152695 taagaagataatatgagtatgagagagaaggttgtacaaa 11152734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38027611 - 38027650
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  38027611 taagaagataatgtgaatatgagagagaaggttgtacaaa 38027650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43205168 - 43205129
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  43205168 taagaagataatgtgagtatgagagagaatgttgtacaaa 43205129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 15570133 - 15570079
Alignment:
Q  143 tgcacaacttttgcatggtgcacaaatcttttccttgtgcattgtaagccccacc 197  Q
    |||||||||| |||||||||||||||||||| ||||||||||  ||| |||||||    
T  15570133 tgcacaacttatgcatggtgcacaaatctttcccttgtgcatgctaaaccccacc 15570079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 18749366 - 18749398
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||||||    
T  18749366 ataatgtgagtatgagagagaaggttgtacaaa 18749398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26387855 - 26387891
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtac 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  26387855 taagaaaataatgtgagtatgagagagaaggttgtac 26387891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 30340065 - 30340029
Alignment:
Q  4 gaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||| ||||||||||    
T  30340065 gaagataatgtgagtatgagagagaaagttgtacaaa 30340029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35798284 - 35798244
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  35798284 taagaagataatgtaagtatgagagagaagattgtacaaat 35798244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44897701 - 44897665
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtac 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  44897701 taagaagataatgtgagtacgagagagaaggttgtac 44897665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4723641 - 4723606
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgta 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  4723641 taagaagataatgtgagtatgagagagaaagttgta 4723606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9384450 - 9384411
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  9384450 taagaagataatatgagtatgagagagaaagttgtacaaa 9384411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 17999817 - 17999782
Alignment:
Q  5 aagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||| ||||||||||    
T  17999817 aagataatgtgagtatgagagagaaagttgtacaaa 17999782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18508153 - 18508114
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  18508153 taagaagataatgtgagtatgagagagaatgttatacaaa 18508114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28264603 - 28264564
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  28264603 taagaagataatgtgagtatgagatagaaagttgtacaaa 28264564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28679203 - 28679164
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  28679203 taagaagataatatgagtatgagagagaatgttgtacaaa 28679164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31635806 - 31635840
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  31635806 taagaagataatgtgagtatgagagagaaagttgt 31635840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 41868365 - 41868399
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  41868365 taagaagataatgtgagtatgagagagaaagttgt 41868399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 6885476 - 6885504
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  6885476 taagaagataatgtgagtatgagagagaa 6885504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 11126539 - 11126511
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  11126539 taagaagataatgtgagtatgagagagaa 11126511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 13850187 - 13850219
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  13850187 ataatgtgagtatgagagagaaagttgtacaaa 13850219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 16051384 - 16051412
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  16051384 taagaagataatgtgagtatgagagagaa 16051412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 16051413 - 16051441
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  16051413 taagaagataatgtgagtatgagagagaa 16051441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 16463361 - 16463325
Alignment:
Q  5 aagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  16463361 aagataatgcgagtatgagagagaaggatgtacaaat 16463325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 20247870 - 20247902
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  20247870 ataatgtgagtatgagagagaaagttgtacaaa 20247902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 23141425 - 23141389
Alignment:
Q  4 gaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||  ||||||||||    
T  23141425 gaagataatgtgagtatgagagagacagttgtacaaa 23141389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 23553215 - 23553179
Alignment:
Q  4 gaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||  ||||||||||    
T  23553215 gaagataatgtgagtatgagagagacagttgtacaaa 23553179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34141518 - 34141478
Alignment:
Q  1 taagaagataatgtgag-tatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  34141518 taagaagataatatgaggtatgagagagaaggttgtacaaa 34141478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 34373073 - 34373041
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  34373073 ataatgtgagtatgagagagaaagttgtacaaa 34373041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 40721839 - 40721807
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  40721839 ataatgtgagtatgagagagaaagttgtacaaa 40721807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 15736880 - 15736778
Alignment:
Q  96 tttaataataatatatcaaaggccgaaaatgaatgtcagcatcaatttgcacaacttttgcatggtgcacaaatcttttccttgtgcattgtaagcccca 195  Q
    ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||| ||||||| |||||||||||| ||||||||||  ||| |||||    
T  15736880 tttaataataatatatcaacggccgaaaatgaatgtcagcactaatttgcacaacttgtgcatggagcacaaatctttcccttgtgcatgctaaacccca 15736781  T
Q  196 ccc 198  Q
    |||    
T  15736780 ccc 15736778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22331207 - 22331247
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22331207 taagaagataatgtgagtatgagagagaaggttgtacaaat 22331247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 12962670 - 12962725
Alignment:
Q  143 tgcacaacttttgcatggtgcacaaatcttttccttgtgcattgtaagccccaccc 198  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||| ||||||||    
T  12962670 tgcacaacttttgcatggtgcacaaatcttttccttatgcatgctaaaccccaccc 12962725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41538557 - 41538518
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41538557 taagaagataatgtgagtatgagagagaaggttgtacaaa 41538518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41910181 - 41910220
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41910181 taagaagataatgtgagtatgagagagaaggttgtacaaa 41910220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 47945058 - 47945019
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47945058 taagaagataatgtgagtatgagagagaaggttgtacaaa 47945019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 47950488 - 47950449
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47950488 taagaagataatgtgagtatgagagagaaggttgtacaaa 47950449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 48639379 - 48639418
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48639379 taagaagataatgtgagtatgagagagaaggttgtacaaa 48639418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 17039232 - 17039193
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  17039232 taagaagataatgtgagtatgagagagaaagttgtacaaa 17039193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27704510 - 27704471
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  27704510 taagaagataatgtgagtatgagatagaaggttgtacaaa 27704471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41030358 - 41030319
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  41030358 taagaagataatgtgagtgtgagagagaaggttgtacaaa 41030319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39415493 - 39415456
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtaca 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  39415493 taagaagataatgtgagtatgagagagaaagttgtaca 39415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41666987 - 41666947
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  41666987 taagaagataatgtgagtatgagagataaagttgtacaaat 41666947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 45335934 - 45335898
Alignment:
Q  4 gaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||| ||||||||||    
T  45335934 gaagataatgtgagtatgagagagaaagttgtacaaa 45335898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1709359 - 1709320
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  1709359 taagaagataatgtgagtatgagagagaatattgtacaaa 1709320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23034309 - 23034348
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  23034309 taagaagataatgtgagtatgagagaataggttgtacaaa 23034348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27866533 - 27866572
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  27866533 taagaagataatgtgagtatgagagataaagttgtacaaa 27866572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 29923742 - 29923707
Alignment:
Q  5 aagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||| ||||||||||    
T  29923742 aagataatgtgagtatgagagagaaagttgtacaaa 29923707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33465035 - 33465074
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  33465035 taagaagataatgtgagtatgagagagaaaattgtacaaa 33465074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40108199 - 40108164
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgta 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  40108199 taagaagataatgtgagtatgagagagaaagttgta 40108164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 184
Target Start/End: Original strand, 26336619 - 26336649
Alignment:
Q  154 tgcatggtgcacaaatcttttccttgtgcat 184  Q
    |||||||||||||||||||||||||||||||    
T  26336619 tgcatggtgcacaaatcttttccttgtgcat 26336649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 10591340 - 10591369
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtac 37  Q
    ||||||||||||||||||||||||||||||    
T  10591340 ataatgtgagtatgagagagaaggttgtac 10591369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 13931843 - 13931884
Alignment:
Q  143 tgcacaacttttgcatggtgcacaaatcttttccttgtgcat 184  Q
    ||||||| || |||||||||||||||||||| ||||||||||    
T  13931843 tgcacaagttgtgcatggtgcacaaatctttcccttgtgcat 13931884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 640460 - 640428
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  640460 ataatgtgagtatgagagagaaagttgtacaaa 640428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 28548224 - 28548256
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  28548224 ataatgtgagtatgagagagaaagttgtacaaa 28548256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 30538694 - 30538662
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  30538694 ataatgtgagtatgagagagaaagttgtacaaa 30538662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 37969999 - 37969967
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  37969999 ataatgtgagtatgagagagaaagttgtacaaa 37969967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 41458903 - 41458935
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  41458903 ataatgtgagtatgagagagaaagttgtacaaa 41458935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 44215174 - 44215218
Alignment:
Q  145 cacaacttttgcatggtgcacaaatcttttccttgtgcattgtaa 189  Q
    ||||||||||| |||||| |||||| |||||||||||||| ||||    
T  44215174 cacaacttttgtatggtgtacaaattttttccttgtgcatcgtaa 44215218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 49142513 - 49142541
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  49142513 taagaagataatgtgagtatgagagagaa 49142541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 1579495 - 1579597
Alignment:
Q  96 tttaataataatatatcaaaggccgaaaatgaatgtcagcatcaatttgcacaacttttgcatggtgcacaaatcttttccttgtgcattgtaagcccca 195  Q
    ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||| ||||||| |||||||||||| ||||||||||  ||| |||||    
T  1579495 tttaataataatatatcaacggccgaaaatgaatgtcagcactaatttgcacaacttgtgcatggagcacaaatctttcccttgtgcatgctaaacccca 1579594  T
Q  196 ccc 198  Q
    |||    
T  1579595 ccc 1579597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 29617194 - 29617279
Alignment:
Q  98 taataataatatatcaaaggccgaaaatgaatgtcagcatcaatttgcacaacttttgcatggtgcacaaatcttttccttgtgcat 184  Q
    ||||||||||||||||| |||| ||||| ||||||| ||  |||||  ||||||| ||||| ||| |||||||||||||||||||||    
T  29617194 taataataatatatcaacggccaaaaataaatgtcaacactaatttatacaacttatgcat-gtgtacaaatcttttccttgtgcat 29617279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 34968936 - 34968973
Alignment:
Q  143 tgcacaacttttgcatggtgcacaaatcttttccttgt 180  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34968936 tgcacaacttttgcatggtgcacaaatcttttccttgt 34968973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22422225 - 22422186
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  22422225 taagaagataatgtgagtatgagagagaaagttgtacaaa 22422186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9395333 - 9395372
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  9395333 taagaagataatgtgagtatgaaagagaaagttgtacaaa 9395372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 17442897 - 17442858
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  17442897 taagaagataatgtgagtataagagagaaagttgtacaaa 17442858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25567486 - 25567525
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  25567486 taagaagataatgtgagtatgagagataaagttgtacaaa 25567525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27790231 - 27790266
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgta 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  27790231 taagaagataatgtgagtatgagagataaggttgta 27790266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32135427 - 32135466
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  32135427 taagaagataatgtgagtatgatagagaaagttgtacaaa 32135466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21506411 - 21506377
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  21506411 taagaagataatgtgagtatgagagagaaagttgt 21506377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 34792088 - 34792058
Alignment:
Q  10 aatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||||    
T  34792088 aatgtgagtatgagagagaaggttgtacaaa 34792058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 35173885 - 35173840
Alignment:
Q  139 aatttgcacaacttttgcatggtgcacaaatcttttccttgtgcat 184  Q
    |||||||||||| | ||||||| ||||||||||||||||| |||||    
T  35173885 aatttgcacaacctgtgcatggagcacaaatcttttccttatgcat 35173840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 608655 - 608695
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||||||||||||| ||| ||||| ||||||||||||||    
T  608655 taagaagataatgtgaatataagagataaggttgtacaaat 608695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 25995510 - 25995478
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  25995510 ataatgtgagtatgagagagaaagttgtacaaa 25995478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 11233380 - 11233279
Alignment:
Q  96 tttaataataatatatcaaaggccgaaaatgaatgtcagcatcaatttgcacaacttttgcatggtgcacaaatcttttccttgtgcattgtaagcccca 195  Q
    |||||||||| |||||||| |||||||||||||||||||||  ||||||||||| || |||| || |||||||||||| ||||||||||  ||| |||||    
T  11233380 tttaataatagtatatcaacggccgaaaatgaatgtcagcactaatttgcacaatttgtgcacggagcacaaatctttcccttgtgcatgctaaacccca 11233281  T
Q  196 cc 197  Q
    ||    
T  11233280 cc 11233279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36899477 - 36899516
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36899477 taagaagataatgtgagtatgagagagaaggttgtacaaa 36899516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4820230 - 4820191
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  4820230 taagaagataatatgagtatgagagagaaggttgtacaaa 4820191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7080605 - 7080566
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  7080605 taagaagataatgtgagtatgagagagaaagttgtacaaa 7080566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18729285 - 18729324
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  18729285 taagaagataatgtgagtatgaaagagaaggttgtacaaa 18729324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20985525 - 20985564
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  20985525 taagaagataatgtgagtatgagagagaaagttgtacaaa 20985564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22653730 - 22653691
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  22653730 taagaagataatgtgagtatgagagagaaagttgtacaaa 22653691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34693212 - 34693251
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  34693212 taagaagataatgtgagtatgagagagaagattgtacaaa 34693251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 37821121 - 37821160
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  37821121 taagaagataatgtgagtataagagagaaggttgtacaaa 37821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 39032600 - 39032639
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  39032600 taagaagataatatgagtatgagagagaaggttgtacaaa 39032639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3031909 - 3031870
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  3031909 taagaagataatgtgagtatgaaagagaaagttgtacaaa 3031870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9940131 - 9940096
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgta 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9940131 taagaagataatgtgagtatgagagagaaagttgta 9940096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12203222 - 12203183
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  12203222 taagaagataatgtgagcatgagagagaaagttgtacaaa 12203183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 12891092 - 12891131
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  12891092 taagaagataatgtgaatatgagagagaatgttgtacaaa 12891131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14126491 - 14126456
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgta 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  14126491 taagaagataaagtgagtatgagagagaaggttgta 14126456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 17574224 - 17574259
Alignment:
Q  5 aagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||| ||||||||||    
T  17574224 aagataatgtgagtatgagagagaaagttgtacaaa 17574259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11880983 - 11881017
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  11880983 taagaagataatgtgagtatgagagagaaagttgt 11881017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 34400691 - 34400659
Alignment:
Q  3 agaagataatgtgagtatgagagagaaggttgt 35  Q
    |||| ||||||||||||||||||||||||||||    
T  34400691 agaatataatgtgagtatgagagagaaggttgt 34400659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 42364500 - 42364464
Alignment:
Q  5 aagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  42364500 aagataatgcgagtatgagagagaaagttgtacaaat 42364464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 11765210 - 11765267
Alignment:
Q  141 tttgcacaacttttgcatggtgcacaaatcttttccttgtgcattgtaagccccaccc 198  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  11765210 tttgcacaacttttgcatggtgcacaaatcttttccgtatgcattgtaaaccccaccc 11765267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1402725 - 1402686
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1402725 taagaagataatgtgagtatgagagagaaggttgtacaaa 1402686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 29555835 - 29555873
Alignment:
Q  2 aagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29555835 aagaagataatgtgagtatgagagagaaggttgtacaaa 29555873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 51859016 - 51859061
Alignment:
Q  139 aatttgcacaacttttgcatggtgcacaaatcttttccttgtgcat 184  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||    
T  51859016 aatttgcacaacttgtgcatggtgcacaaatctttcccttgtgcat 51859061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14839041 - 14839080
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  14839041 taagaagataatgtgagtatgggagagaaggttgtacaaa 14839080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29057723 - 29057684
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  29057723 taagaagataatgtgagtatgagagagaaagttgtacaaa 29057684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30664578 - 30664539
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  30664578 taagaagataatgtgagtatgagagagaaagttgtacaaa 30664539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35368686 - 35368647
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  35368686 taagaagataatgtgagtatgagagagaaagttgtacaaa 35368647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 50745624 - 50745585
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  50745624 taagaagataatgtgagtatgagagagaaagttgtacaaa 50745585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2935507 - 2935546
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  2935507 taagaagataatgtgagtatgaaagagaaagttgtacaaa 2935546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21481839 - 21481800
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  21481839 taagaagataatgtgagtatgagagaaaaagttgtacaaa 21481800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29525308 - 29525269
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  29525308 taagaagataatgtgagtatgagagagaatattgtacaaa 29525269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29846887 - 29846926
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  29846887 taagaatataatgtgagtatgagagagaaagttgtacaaa 29846926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32151963 - 32151924
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  32151963 taagaagataatatgagtatgagagagaaggttatacaaa 32151924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34900715 - 34900676
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  34900715 taagaaaataatgtgagtatgatagagaaggttgtacaaa 34900676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43149339 - 43149378
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  43149339 taagaagataatgtgagtatgagaaagaaagttgtacaaa 43149378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43220137 - 43220176
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  43220137 taagaagataatgtgagtatgagagagaaagttttacaaa 43220176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44689878 - 44689839
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  44689878 taagaagataatgtgagtatgagagaaaagattgtacaaa 44689839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 48490513 - 48490548
Alignment:
Q  5 aagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||| ||||||||||    
T  48490513 aagataatgtgagtatgagagagaaagttgtacaaa 48490548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 49361831 - 49361870
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  49361831 taagaagataatgtgagtatgagagaaaaagttgtacaaa 49361870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 184
Target Start/End: Complemental strand, 11758899 - 11758869
Alignment:
Q  154 tgcatggtgcacaaatcttttccttgtgcat 184  Q
    |||||||||||||||||||||||||||||||    
T  11758899 tgcatggtgcacaaatcttttccttgtgcat 11758869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47988481 - 47988515
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  47988481 taagaagataatgtgagtatgagagagaaagttgt 47988515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47997768 - 47997802
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  47997768 taagaagataatgtgagtatgagagagaaagttgt 47997802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 48007055 - 48007089
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  48007055 taagaagataatgtgagtatgagagagaaagttgt 48007089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7934050 - 7934022
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  7934050 taagaagataatgtgagtatgagagagaa 7934022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8627932 - 8627904
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  8627932 taagaagataatgtgagtatgagagagaa 8627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 9557925 - 9557957
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  9557925 ataatgtgagtatgagagagaaagttgtacaaa 9557957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 16295532 - 16295500
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  16295532 ataatgtgagtatgagagagaaagttgtacaaa 16295500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27276809 - 27276769
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||||||||||||| ||||||||| || |||||||||||    
T  27276809 taagaagataatgtgaatatgagagataaagttgtacaaat 27276769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 37585506 - 37585478
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  37585506 taagaagataatgtgagtatgagagagaa 37585478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 37710479 - 37710451
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  37710479 taagaagataatgtgagtatgagagagaa 37710451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 50025701 - 50025733
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  50025701 ataatgtgagtatgagagagaaagttgtacaaa 50025733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 51032620 - 51032648
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  51032620 taagaagataatgtgagtatgagagagaa 51032648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 51385436 - 51385464
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  51385436 taagaagataatgtgagtatgagagagaa 51385464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29638790 - 29638750
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29638790 taagaagataatgtgagtatgagagagaaggttgtacaaat 29638750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5574255 - 5574294
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5574255 taagaagataatgtgagtatgagagagaaggttgtacaaa 5574294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30414939 - 30414900
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30414939 taagaagataatgtgagtatgagagagaaggttgtacaaa 30414900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48962061 - 48962022
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48962061 taagaagataatgtgagtatgagagagaaggttgtacaaa 48962022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 51727996 - 51728035
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  51727996 taagaagataatgtgagtatgagagagaaggttgtacaaa 51728035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12990465 - 12990501
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtac 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  12990465 taagaagataatgtgagtatgagagagaaggttgtac 12990501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11121556 - 11121517
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  11121556 taagaagataatgtgagtatgagagagaaagttgtacaaa 11121517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33111907 - 33111946
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  33111907 taagaatataatgtgagtatgagagagaaggttgtacaaa 33111946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 48390073 - 48390112
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  48390073 taagaagataatgtgagtatgagagagaagtttgtacaaa 48390112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29094742 - 29094778
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtac 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  29094742 taagaagataatgtgagtatgagagagaagattgtac 29094778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 48256982 - 48256942
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||||||||||||| |||||||||||| |||||||||||    
T  48256982 taagaagataatgtgaatatgagagagaaagttgtacaaat 48256942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1100292 - 1100253
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  1100292 taagaagataatgtgagtatgatagagaaagttgtacaaa 1100253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2854956 - 2854995
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  2854956 taagaagataatgtgagtatgagagaaaagattgtacaaa 2854995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8577498 - 8577537
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  8577498 taagaagataatgtaaatatgagagagaaggttgtacaaa 8577537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17167924 - 17167889
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgta 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  17167924 taagaagataatgttagtatgagagagaaggttgta 17167889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31244729 - 31244768
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  31244729 taagaagataatgtgaatatgagagagaatgttgtacaaa 31244768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35030758 - 35030797
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  35030758 taagaagataatgtaagtatgagagagaaagttgtacaaa 35030797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40118711 - 40118750
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  40118711 taagaagataatgtgagtatgagagagaaaattgtacaaa 40118750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 50460708 - 50460747
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  50460708 taagaagataatgtgagtatgagaaagaaagttgtacaaa 50460747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25098784 - 25098818
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  25098784 taagaatataatgtgagtatgagagagaaggttgt 25098818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 40240110 - 40240147
Alignment:
Q  4 gaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  40240110 gaagataatgtgagtatgaaagagaaagttgtacaaat 40240147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 2827713 - 2827745
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  2827713 ataatgtgagtatgagagagaaagttgtacaaa 2827745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 11897242 - 11897210
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  11897242 ataatgtgagtatgagagagaaagttgtacaaa 11897210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 12999825 - 12999857
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  12999825 ataatgtgagtatgagagagaaagttgtacaaa 12999857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 16252758 - 16252794
Alignment:
Q  4 gaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  16252758 gaagataatgtgagtatgaaagagaaagttgtacaaa 16252794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 22674780 - 22674748
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  22674780 ataatgtgagtatgagagagaaagttgtacaaa 22674748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37947216 - 37947256
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||||||||||||||||||| ||||||  ||||||||||    
T  37947216 taagaagataatgtgagtatgatagagaaaattgtacaaat 37947256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44672026 - 44672054
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  44672026 taagaagataatgtgagtatgagagagaa 44672054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 49615280 - 49615312
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| ||||||||||||||||||||    
T  49615280 ataatgtgagtaagagagagaaggttgtacaaa 49615312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48729 - 48690
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48729 taagaagataatgtgagtatgagagagaaggttgtacaaa 48690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37294669 - 37294630
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37294669 taagaagataatgtgagtatgagagagaaggttgtacaaa 37294630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6243109 - 6243070
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  6243109 taagaagataatgtgagtatgagagagaaagttgtacaaa 6243070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20995054 - 20995093
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  20995054 taagaagataatgtaagtatgagagagaaggttgtacaaa 20995093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22836135 - 22836174
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  22836135 taagaagataatgtgagtatgagagagaaagttgtacaaa 22836174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23709051 - 23709012
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  23709051 taagaagataatgtgagtatgagatagaaggttgtacaaa 23709012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25430721 - 25430682
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  25430721 taagaagataatgtgagtatgagatagaaggttgtacaaa 25430682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34838266 - 34838305
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  34838266 taagaagataatgtgagtatgagagagaagattgtacaaa 34838305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 34909097 - 34909152
Alignment:
Q  143 tgcacaacttttgcatggtgcacaaatcttttccttgtgcattgtaagccccaccc 198  Q
    |||||||||| |||||||||||||||||||| ||||||||||  ||| ||||||||    
T  34909097 tgcacaacttgtgcatggtgcacaaatctttcccttgtgcatgctaaaccccaccc 34909152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43605649 - 43605687
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaa 39  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  43605649 taagaagataatgtgagtatgagagagaagattgtacaa 43605687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4148651 - 4148690
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  4148651 taagaagataatgtgagtatgagagagaatattgtacaaa 4148690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9985674 - 9985709
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgta 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9985674 taagaagataatgtgagtatgagagagaatgttgta 9985709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13924086 - 13924047
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  13924086 taagaagataatgtgagcatgagagagaaagttgtacaaa 13924047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18550054 - 18550015
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  18550054 taagaagataatatgagtatgagagagaatgttgtacaaa 18550015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27300421 - 27300382
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  27300421 taagaagataatgtgaatatgagagagaaagttgtacaaa 27300382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28713168 - 28713133
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgta 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  28713168 taagaagataatgtgaatatgagagagaaggttgta 28713133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28720515 - 28720480
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgta 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  28720515 taagaagataatgtgaatatgagagagaaggttgta 28720480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28728157 - 28728122
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgta 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  28728157 taagaagataatgtgaatatgagagagaaggttgta 28728122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37471718 - 37471679
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  37471718 taagaagataatgtgagtacgagagagaaagttgtacaaa 37471679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43590769 - 43590730
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  43590769 taagaagataatgtgagtatgagagagaaagttatacaaa 43590730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7279922 - 7279956
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  7279922 taagaagataatgtgagtatgagagagaaagttgt 7279956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9550403 - 9550437
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  9550403 taagaagataatgtgagtatgagagagaaagttgt 9550437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42716395 - 42716361
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  42716395 taagaagataatgtgagtatgagagagaaagttgt 42716361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 40
Target Start/End: Complemental strand, 9314476 - 9314447
Alignment:
Q  11 atgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||    
T  9314476 atgtgagtatgagagagaaggttgtacaaa 9314447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 32057319 - 32057278
Alignment:
Q  143 tgcacaacttttgcatggtgcacaaatcttttccttgtgcat 184  Q
    ||||||| || |||||||||||||||||||| ||||||||||    
T  32057319 tgcacaagttgtgcatggtgcacaaatctttcccttgtgcat 32057278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 41776248 - 41776211
Alignment:
Q  3 agaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  41776248 agaagatgatgtgagtatgagagagaaagttgtacaaa 41776211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 21649167 - 21649203
Alignment:
Q  4 gaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  21649167 gaagataatgtgagtatgaaagagaaagttgtacaaa 21649203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 32674235 - 32674267
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  32674235 ataatgtgagtatgagagagaaagttgtacaaa 32674267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33692796 - 33692756
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||||||||| ||||||||||| |||| |||||||||||    
T  33692796 taagaagataatatgagtatgagaaagaaagttgtacaaat 33692756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34883238 - 34883198
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||| ||||||||||||| |||||||| |||||||||||    
T  34883238 taagaaaataatgtgagtataagagagaaagttgtacaaat 34883198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 38939192 - 38939224
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  38939192 ataatgtgagtatgagagagaaagttgtacaaa 38939224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 40459765 - 40459797
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  40459765 ataatgtgagtatgagagagaaagttgtacaaa 40459797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18944354 - 18944315
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18944354 taagaagataatgtgagtatgagagagaaggttgtacaaa 18944315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21766622 - 21766583
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21766622 taagaagataatgtgagtatgagagagaaggttgtacaaa 21766583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 26885903 - 26885844
Alignment:
Q  139 aatttgcacaacttttgcatggtgcacaaatcttttccttgtgcattgtaagccccaccc 198  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||  ||| ||||||||    
T  26885903 aatttgcacaacttgtgcatggtgcacaaatctttcccttgtgcatgctaaaccccaccc 26885844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32294756 - 32294795
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32294756 taagaagataatgtgagtatgagagagaaggttgtacaaa 32294795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36364781 - 36364820
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36364781 taagaagataatgtgagtatgagagagaaggttgtacaaa 36364820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46799831 - 46799792
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46799831 taagaagataatgtgagtatgagagagaaggttgtacaaa 46799792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4577632 - 4577593
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  4577632 taagaagataatgtgagtatgagagagaaagttgtacaaa 4577593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4878042 - 4878003
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  4878042 taagaagataatatgagtatgagagagaaggttgtacaaa 4878003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6126928 - 6126889
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  6126928 taagaagataatgtgagtatgagagagaatgttgtacaaa 6126889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8614251 - 8614212
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  8614251 taagaaaataatgtgagtatgagagagaaggttgtacaaa 8614212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 36110209 - 36110170
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  36110209 taagaagataatgtgaatatgagagagaaggttgtacaaa 36110170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 45521575 - 45521614
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  45521575 taagaagataatatgagtatgagagagaaggttgtacaaa 45521614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 50291357 - 50291322
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  50291357 taagaagataatgtgagtatgagagagaaggttgta 50291322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1728083 - 1728124
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaatt 42  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  1728083 taagaagataatgtaagtatgaaagagaaggttgtacaaatt 1728124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1868889 - 1868928
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  1868889 taagaagataatgtgagtatgagatagaaagttgtacaaa 1868928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6686121 - 6686082
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  6686121 taagaagataatgtaagtatgagagagaatgttgtacaaa 6686082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9096012 - 9095973
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  9096012 taagaagataatgtgagtatgagagagaaaattgtacaaa 9095973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24310517 - 24310556
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  24310517 taagaagaaaatgtgagtatgagagagaaagttgtacaaa 24310556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29577432 - 29577471
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  29577432 taagaagataatgtgagtatgagaaagaaagttgtacaaa 29577471  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 48650252 - 48650291
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  48650252 taagaagataatatgagtatgagagagaaagttgtacaaa 48650291  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 54803324 - 54803363
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  54803324 taagaacataatgtgagtatgagagagaaagttgtacaaa 54803363  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 54848213 - 54848174
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  54848213 taagaaaataatgtgaatatgagagagaaggttgtacaaa 54848174  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9472509 - 9472543
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  9472509 taagaagataatgtgagtatgagagagaaagttgt 9472543  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34259890 - 34259856
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  34259890 taagaagataatgtgagtatgagagagaaagttgt 34259856  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 39881026 - 39881060
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgt 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  39881026 taagaagataatgtgagtatgagagagaaagttgt 39881060  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 13744134 - 13744175
Alignment:
Q  143 tgcacaacttttgcatggtgcacaaatcttttccttgtgcat 184  Q
    |||||||||| |||||||||||||||||||| ||||| ||||    
T  13744134 tgcacaacttatgcatggtgcacaaatctttcccttgagcat 13744175  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 15515858 - 15515825
Alignment:
Q  2 aagaagataatgtgagtatgagagagaaggttgt 35  Q
    |||||||||||||||||||||||||||| |||||    
T  15515858 aagaagataatgtgagtatgagagagaaagttgt 15515825  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 31413784 - 31413821
Alignment:
Q  3 agaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  31413784 agaagataatgtcagtatgagagagaaagttgtacaaa 31413821  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 47326260 - 47326289
Alignment:
Q  143 tgcacaacttttgcatggtgcacaaatctt 172  Q
    ||||||||||||||||||||||||||||||    
T  47326260 tgcacaacttttgcatggtgcacaaatctt 47326289  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 47341056 - 47341085
Alignment:
Q  143 tgcacaacttttgcatggtgcacaaatctt 172  Q
    ||||||||||||||||||||||||||||||    
T  47341056 tgcacaacttttgcatggtgcacaaatctt 47341085  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 5208330 - 5208362
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  5208330 ataatgtgagtatgagagagaaagttgtacaaa 5208362  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 34537998 - 34537966
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  34537998 ataatgtgagtatgagagagaaagttgtacaaa 34537966  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39699462 - 39699502
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||||||||||| ||||| | ||||||||||||||||||    
T  39699462 taagaagataatgtaagtataaaagagaaggttgtacaaat 39699502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 40755996 - 40755968
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  40755996 taagaagataatgtgagtatgagagagaa 40755968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 46686301 - 46686269
Alignment:
Q  8 ataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||| ||||||||||    
T  46686301 ataatgtgagtatgagagagaaagttgtacaaa 46686269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 55996497 - 55996469
Alignment:
Q  1 taagaagataatgtgagtatgagagagaa 29  Q
    |||||||||||||||||||||||||||||    
T  55996497 taagaagataatgtgagtatgagagagaa 55996469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 56264867 - 56264907
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    |||||| ||||||||||||||||||||||  ||||||||||    
T  56264867 taagaaaataatgtgagtatgagagagaattttgtacaaat 56264907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1841 - 1880
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  1841 taagaagataatgtgagtatgagagagaagattgtacaaa 1880  T

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Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 145136 - 145097
Alignment:
Q  1 taagaagataatgtgagtatgagagagaaggttgtacaaa 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  145136 taagaagataatgtgagtatgagagagaatgttgtacaaa 145097  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 48256 - 48220
Alignment:
Q  5 aagataatgtgagtatgagagagaaggttgtacaaat 41  Q
    ||||||||||||||||||||||||| |||||||||||    
T  48256 aagataatgtgagtatgagagagaaagttgtacaaat 48220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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