View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14520_high_23 (Length: 227)
Name: NF14520_high_23
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14520_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 46999934 - 47000154
Alignment:
| Q |
1 |
ctgagacatagacatagacaaggcttgactttaatacacatgattatcatgaactttcctaaaaagtttgaggaggtagttggatctcataaatgatttt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46999934 |
ctgatacatagacatagacaaggcttgactttaatacgcatgattatcatgaactttcctaaaaagtttgaggaggtagttggatctcataaatgatttt |
47000033 |
T |
|
| Q |
101 |
aattgctactgactaactgtaacaaggttttagtacatgtttataactgtacaacatcagaaaattacaattattttatgatccaacaataatgtttttg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47000034 |
aattgctactgaccaactgtaacaaggttttagtacatgtttataactttacaacatcagaaaattacaattattttatgatccaacaataatgtttttg |
47000133 |
T |
|
| Q |
201 |
tttatggactgtaattttgtt |
221 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
47000134 |
tttatggacagtaattttgtt |
47000154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 7935213 - 7935338
Alignment:
| Q |
10 |
agacatagacaaggcttgactttaatacacatgattatcatgaactttcctaaaaagtttgaggaggtagttggatctcataaatgattttaattgctac |
109 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
7935213 |
agacatagacaaagcttaactttaatacacatgattatcatgaactttcctaaaaagtttgaggaggtaattggatctcataaatggttttaattgcta- |
7935311 |
T |
|
| Q |
110 |
tgactaactgtaacaaggttttagtacat |
138 |
Q |
| |
|
||||||| || |||||||||||||||| |
|
|
| T |
7935312 |
--actaactatagcaaggttttagtacat |
7935338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University